Browse Element(s) Details


OsAffx.12625.1.S1_at

Description tigr:9630.m05288
TID=OsAffx.12625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein
LOC_Os02g53520Os.26359.1.S1_a_at6/112+32725320..32734354kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12625.1.S1_at--873--6031Chr02:32711254..32711278 (25 bp)
GAGATCTCATGGTACCCATCGCAAG
LOC_Os02g53480
OsAffx.12625.1.S1_at--292--5171Chr02:32711274..32711298 (25 bp)
GCAAGCCAACTGATCTCCGAGGACA
LOC_Os02g53480
OsAffx.12625.1.S1_at--1075--511Chr02:32711320..32711344 (25 bp)
ATCGACATTGTGTCCTAGCCCAGGA
LOC_Os02g53480
OsAffx.12625.1.S1_at--5--1011Chr02:32711341..32711365 (25 bp)
AGGATTTCACGAACTTCCTCCAGAA
LOC_Os02g53480
OsAffx.12625.1.S1_at--1084--7351Chr02:32711409..32711433 (25 bp)
GTGACGTTCGGTGCCATTGAAGCTA
LOC_Os02g53480
OsAffx.12625.1.S1_at--391--4071Chr02:32711452..32711476 (25 bp)
CGAGCAACGCCTTGATTGTCTTTAG
LOC_Os02g53480
OsAffx.12625.1.S1_at--295--5651Chr02:32711484..32711508 (25 bp)
GACAGTGTAGCTATCACGGTCCATA
LOC_Os02g53480
OsAffx.12625.1.S1_at--951--2291Chr02:32711525..32711549 (25 bp)
AAATGGGCTCTATTTCGCGGTCCCG
LOC_Os02g53480
OsAffx.12625.1.S1_at--67--6611Chr02:32712246..32712270 (25 bp)
GATTGTGCCCAACCAGAACCTGAAT
LOC_Os02g53480
OsAffx.12625.1.S1_at--96--8171Chr02:32712335..32712359 (25 bp)
GGAACACCATTTTTCACACCAGTTT
LOC_Os02g53480
OsAffx.12625.1.S1_at--567--10371Chr02:32712357..32712381 (25 bp)
TTTTACGCTGTCTACCGTGTCAGAA
LOC_Os02g53480
Target Sequence 
GAGATCTCATGGTACCCATCGCAAGCCAACTGATCTCCGAGGACAGGGACAGGTACAACGACCTCCATCGACATTGTGTC
CTAGCCCAGGATTTCACGAACTTCCTCCAGAAGCTCAACAAGGTGAGCGCGCTCGACCAGGTGTGCACGGACATGGTGAC
GTTCGGTGCCATTGAAGCTATAGCCTTGTGCGAGAGGCCGAGCAACGCCTTGATTGTCTTTAGGGATGAAGACAGTGTAG
CTATCACGGTCCATAGGCAGGAAGAGGTCGAAAATGGGCTCTATTTCGCGGTCCCGCCTCTCCACCTTGCCCTCCCATCC
TGTTTCATCGAATCCAAAATTATCAAGAATATCAATACCGTTGTGGATGCGGCCGAGGCATGTGATTGTGCCCAACCAGA
ACCTGAATTACCCGAGTCCTACGACAACGGCGACGACCACTCATCATGGTCATGGAGACAAAAGGTCACCATGGAACACC
ATTTTTCACACCAGTTTTACGCTGTCTACCGTGTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis