Browse Element(s) Details


Os.10873.1.S1_at

Description gb:AK065228.1
DB_XREF= gi:32975246
TID=Os.10873.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H04, full insert sequence.
FL= gb:AK065228.1 gb:AK060740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5342010/11Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10873.1.S1_at--116--51Chr02:32683297..32683321 (25 bp)
ATTGAGACAGCAATCGCCGATCTCC
LOC_Os02g53420
Os.10873.1.S1_at--985--9291Chr02:32683275..32683299 (25 bp)
TCCGCTCTGTGATGACCTCAGATGA
LOC_Os02g53420
Os.10873.1.S1_at--901--771Chr02:32683078..32683102 (25 bp)
ATGTGCTAACAGTTGCCCTGCTTTT
LOC_Os02g53420
Os.10873.1.S1_at--467--1391Chr02:32683024..32683048 (25 bp)
AGACCGGGATACTAGGACCTTGCGC
LOC_Os02g53420
Os.10873.1.S1_at--772--8091Chr02:32683010..32683034 (25 bp)
GGACCTTGCGCGTTGTAATAAGTTT
LOC_Os02g53420
Os.10873.1.S1_at--773--2351Chr02:32682975..32682999 (25 bp)
AAACACACCTAAGCTCGTAGGCCTG
LOC_Os02g53420
Os.10873.1.S1_at--914--4011Chr02:32682960..32682984 (25 bp)
CGTAGGCCTGTCTAGTTGGGTTGTA
LOC_Os02g53420
Os.10873.1.S1_at--293--10871Chr02:32682917..32682941 (25 bp)
TTGGCTCCTTTTGCTTGCGATACAT
LOC_Os02g53420
Os.10873.1.S1_at--777--6471Chr02:32682899..32682923 (25 bp)
GATACATCGCGCAAACTGGACGTGA
LOC_Os02g53420
Os.10873.1.S1_at--1132--4251Chr02:32682773..32682797 (25 bp)
CCTGGTGCTGTTTTGGACTACAAGT
LOC_Os02g53420
Os.10873.1.S1_at--414--7951NONE
GGATCTCGGCTCTAAAACAAGTCAT
NONE
Target Sequence 
ATTGAGACAGCAATCGCCGATCTCCGCTCTGTGATGACCTCAGATGACATCGAGAAGATCAAGGCCAATATCGAAGCGGC
CAACAAGGCTGTTTCAAAGATTGGGCAGCATATGTCTGGTGGTGGTGGTGGCGCAGGCGGTTCAGAGACAGGAGGATCTC
AGGGCGGAGGCGAGCAGGCTCCAGAGGCTGAGTACGAGGAGGTCAAGAAGTGAAACCGCATGTGCTAACAGTTGCCCTGC
TTTTAGAGATAGCAGCTAGTAGTTTTTTGGAAGAGACCGGGATACTAGGACCTTGCGCGTTGTAATAAGTTTTGTCATAC
GAAAACACACCTAAGCTCGTAGGCCTGTCTAGTTGGGTTGTAATGCATGACTTGGTTGCATTGGCTCCTTTTGCTTGCGA
TACATCGCGCAAACTGGACGTGATATTGTGATATTTTTTTTCANCCTGTTCACTCATGAGTACAATGAATCCTGCATGGA
AGNGATGCTGCTNNNNNNNNTTCCGCTTGCTTGCTTGTGCTGAGCCTGGTGCTGTTTTGGACTACAAGTCGAGGATCTCG
GCTCTAAAACAAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis