Browse Element(s) Details


Os.51391.1.S1_at

Description gb:AK062694.1
DB_XREF= gi:32972712
TID=Os.51391.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A07, full insert sequence.
FL= gb:AK062694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5335011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51391.1.S1_at--563--7531Chr02:32658153..32658177 (25 bp)
GTGGCAAGCTCCAGCAACGTCGAGG
LOC_Os02g53350
Os.51391.1.S1_at--599--6151Chr02:32658132..32658156 (25 bp)
GAGGTCATCGACACCACCGCTGCGG
LOC_Os02g53350
Os.51391.1.S1_at--486--7611Chr02:32658095..32658119 (25 bp)
GGGACGTCGCCAAGAACCGCCAAGA
LOC_Os02g53350
Os.51391.1.S1_at--218--1451Chr02:32658083..32658107 (25 bp)
AGAACCGCCAAGAATGGCGCGCGGC
LOC_Os02g53350
Os.51391.1.S1_at--371--8331Chr02:32657870..32657894 (25 bp)
GGCTGCTCGGTTTCCACTACGGGTT
LOC_Os02g53350
Os.51391.1.S1_at--130--4531Chr02:32657790..32657814 (25 bp)
GCCGCTAGCCACTGGAGCGAACTGT
LOC_Os02g53350
Os.51391.1.S1_at--1026--5871Chr02:32657776..32657800 (25 bp)
GAGCGAACTGTCCATGGCCAAGCAT
LOC_Os02g53350
Os.51391.1.S1_at--634--8451Chr02:32657762..32657786 (25 bp)
TGGCCAAGCATTCCTCCATAGACGA
LOC_Os02g53350
Os.51391.1.S1_at--373--5371Chr02:32657676..32657700 (25 bp)
GAAGACACTGACTAATTAACTCGAT
LOC_Os02g53350
Os.51391.1.S1_at--962--10471Chr02:32657661..32657685 (25 bp)
TTAACTCGATTTCACAGCACTTTGT
LOC_Os02g53350
Os.51391.1.S1_at--806--1451Chr02:32657646..32657670 (25 bp)
AGCACTTTGTTCGATTAAACCATGA
LOC_Os02g53350
Target Sequence 
GTGGCAAGCTCCAGCAACGTCGAGGTCATCGACACCACCGCTGCGGCGGCGGCGAGGGGGGACGTCGCCAAGAACCGCCA
AGAATGGCGCGCGGCGGGCGGGCTCGGGCTCGGGCTCAACCTGTCGGAGGACATGAGGCGCGGGATGATGTGGCGGATGC
TGGCGCCACCCGCGGCGGCGGTCGCGGCGGAGGCCGCGTTCCTGAGGGTGCTTGACGGCGCGGCGAGCGACGCGGCGCCG
GCCTGGGCCGGCTCCGCGGGCTCCGCCGTGCTGTTCGCCGTGGGGCTGCTCGGTTTCCACTACGGGTTCCTGTCGTCGAG
GTGGAACGCCGCGGAGAGGGGCTCGCTGGTGGGGTGGGAGCTCGCCGCTAGCCACTGGAGCGAACTGTCCATGGCCAAGC
ATTCCTCCATAGACGACGAAGTGGACGACGACGAGGACGAGGAGGAGGAAGACGAAGATGAGGAAGAAGTAGAAGATGAA
GACACTGACTAATTAACTCGATTTCACAGCACTTTGTTCGATTAAACCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis