Browse Element(s) Details


Os.8607.1.S1_at

Description gb:AK071811.1
DB_XREF= gi:32981834
TID=Os.8607.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.8607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113F04, full insert sequence.
FL= gb:AK071811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5333011/11pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8607.1.S1_at--204--7951Chr02:32640103..32640127 (25 bp)
GGATATTTCCATTCCTATGTTCAAG
LOC_Os02g53330
Os.8607.1.S1_at--621--5831Chr02:32640079..32640103 (25 bp)
GACCTGATTGATGGACTTCATTCTG
LOC_Os02g53330
Os.8607.1.S1_at--971--3651Chr02:32640064..32640088 (25 bp)
CTTCATTCTGATTTGCGTTCACATG
LOC_Os02g53330
Os.8607.1.S1_at--107--7891Chr02:32639764..32639788 (25 bp)
GGTTATGCCATGAACACAGCTGAGG
LOC_Os02g53330
Os.8607.1.S1_at--581--1491Chr02:32639711..32639735 (25 bp)
AGCAACAGGCATTGTCCTTGATCCA
LOC_Os02g53330
Os.8607.1.S1_at--952--2751Chr02:32639451..32639475 (25 bp)
AAGACATGGGTGCTAATCCAGCTAA
LOC_Os02g53330
Os.8607.1.S1_at--161--7031Chr02:32639401..32639425 (25 bp)
GTACATACAGGTGGTCTTCTTGGTT
LOC_Os02g53330
Os.8607.1.S1_at--45--2811Chr02:32639284..32639308 (25 bp)
AAGATGTTCTGATTGCTATGCTCCA
LOC_Os02g53330
Os.8607.1.S1_at--753--4871Chr02:32639270..32639294 (25 bp)
GCTATGCTCCAAAATTGCTTCCATT
LOC_Os02g53330
Os.8607.1.S1_at--1151--4911Chr02:32639254..32639278 (25 bp)
GCTTCCATTGTTGTTAGAGGTTTCA
LOC_Os02g53330
Os.8607.1.S1_at--555--6071Chr02:32639209..32639233 (25 bp)
GAGTATTCGCCTCAATTTGTACGAC
LOC_Os02g53330
Target Sequence 
GGATATTTCCATTCCTATGTTCAAGACCTGATTGATGGACTTCATTCTGATTTGCGTTCACATGATTTAGTCAACATTGA
AAATGCTAAGGGCTTAGGTTATGCCATGAACACAGCTGAGGAGCTTAAGTTTGTTAAAGATATAGCTACAGCAACAGGCA
TTGTCCTTGATCCAGTCTACAGTGGAAAGGCAGCATATGGAATGCTGAAAGACATGGGTGCTAATCCAGCTAAGTGGGAA
GGGCGAAAAATTCTTTTTGTACATACAGGTGGTCTTCTTGGTTTGTATGATAAGGTTGATGAGTTATCATCTTTGAGTGG
GAGTTGGCGCAGAATGGATCTTGAAGAATCTGTTCCACGCAAAGATGGAACTGGTAAGATGTTCTGATTGCTATGCTCCA
AAATTGCTTCCATTGTTGTTAGAGGTTTCAGACATCTCATTGTCTAAAAAGAGTATTCGCCTCAATTTGTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis