Browse Element(s) Details


Os.8732.1.S1_at

Description gb:AK100497.1
DB_XREF= gi:32985706
TID=Os.8732.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099D19, full insert sequence.
FL= gb:AK100497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5334011/11cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8732.1.S1_at--197--5671Chr02:32652890..32652914 (25 bp)
GACATGGTACTTGGAACACTCTTCA
LOC_Os02g53340
Os.8732.1.S1_at--48--4651Chr02:32653040..32653064 (25 bp)
GCGTTTGGTTGCTATTCGTACTGTA
LOC_Os02g53340
Os.8732.1.S1_at--472--9571Chr02:32653141..32653165 (25 bp)
TCTTGCGCAATCCACGAGTGCAGGG
LOC_Os02g53340
Os.8732.1.S1_at--692--8891Chr02:32653511..32653535 (25 bp)
TGAGTCACCCTACTGGAGAACCATT
LOC_Os02g53340
Os.8732.1.S1_at--1113--1731Chr02:32653530..32653554 (25 bp)
ACCATTGCTGCAACGCGTATTCAAG
LOC_Os02g53340
Os.8732.1.S1_at--737--3151Chr02:32653623..32653647 (25 bp)
AATTCTGCATTGGAACGTGGCGCGC
LOC_Os02g53340
Os.8732.1.S1_at--1116--4551Chr02:32653642..32653666 (25 bp)
GCGCGCGTGAATGTGATGCTCGTCA
LOC_Os02g53340
Os.8732.1.S1_at--1045--7311Chr02:32653697..32653721 (25 bp)
GTGCTAACGTTTGGTCACATTTTTA
LOC_Os02g53340
Os.8732.1.S1_at--808--171Chr02:32653715..32653739 (25 bp)
ATTTTTATGCGCTAGAGCCCTGACA
LOC_Os02g53340
Os.8732.1.S1_at--935--2091Chr02:32653737..32653761 (25 bp)
ACATCCTTGTGGCTATCTTACTTGG
LOC_Os02g53340
Os.8732.1.S1_at--70--9751Chr02:32653881..32653905 (25 bp)
TAATAACTGTTTCATTCTTGGCCTG
LOC_Os02g53340
Target Sequence 
GACATGGTACTTGGAACACTCTTCAGCTAACAGAGATGGTGGGAGAATGAGATTCCATGGTATGCGTTTGGTTGCTATTC
GTACTGTAAGATGTTTAACAAATGTTGAAGCTTTTGTACTAAGGGCAAGCGATCTCGAAGAAGTAACTTCACAATTTTCA
CGATTCTTGCGCAATCCACGAGTGCAGGGTGCAATCAGGTATGAGTCACCCTACTGGAGAACCATTGCTGCAACGCGTAT
TCAAGTCGCATGGAGGTATCGGAATAGGCGATTGAAGCGAGCTGGGATGTCGAAGTTGAACGATCAATCTTATAATTCTG
CATTGGAACGTGGCGCGCGTGAATGTGATGCTCGTCAGCATGGGCGGGTATGATTTGGATCGACAAGGTGCTAACGTTTG
GTCACATTTTTATGCGCTAGAGCCCTGACATCCTTGTGGCTATCTTACTTGGCAGAATGTATTCTATGTGAGCTACATAA
TTTTTTTTTTGCCCCACAATTAGATCTGGTAGCTAGAGTACCAAACTGGAGGAACTACATCTCATGTATATAATGACGGC
TAGTTTTTCACTAATAACTGTTTCATTCTTGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis