Browse Element(s) Details


OsAffx.24847.1.S1_at

Description tigr:9630.m04665
TID=OsAffx.24847.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5330011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24847.1.S1_at--431--7295Chr10:15111937..15111961 (25 bp)
GTGCCGCTTCCGAGTTCGTCCGCGT
NONE
OsAffx.24847.1.S1_at--877--10653Chr10:15111944..15111968 (25 bp)
TTCCGAGTTCGTCCGCGTGCACTGC
NONE
OsAffx.24847.1.S1_at--674--3716Chr10:15111981..15112005 (25 bp)
CTAGATGCGTCATCCTCAAGCTCAT
NONE
OsAffx.24847.1.S1_at--134--9156Chr10:15111986..15112010 (25 bp)
TGCGTCATCCTCAAGCTCATCCAAT
NONE
OsAffx.24847.1.S1_at--1156--575Chr10:15112004..15112028 (25 bp)
ATCCAATCCATGAACGCCCGAAGTG
NONE
OsAffx.24847.1.S1_at--1090--5395Chr10:15112015..15112039 (25 bp)
GAACGCCCGAAGTGTCATTGTCCAG
NONE
OsAffx.24847.1.S1_at--345--5335Chr10:15112023..15112047 (25 bp)
GAAGTGTCATTGTCCAGCTCGTCGC
NONE
OsAffx.24847.1.S1_at--543--3935Chr10:15112048..15112148 (25 bp)
CGGCATTGTCGGCTCATCCATCGGC
NONE
OsAffx.24847.1.S1_at--1090--3773Chr10:15112181..15112205 (25 bp)
CTCGTTGCGGGCTCGCCTGAGTGCC
NONE
OsAffx.24847.1.S1_at--1075--9235Chr10:15112216..15112240 (25 bp)
TCCTTGCCCTGGATCCGTTGTCTAC
NONE
OsAffx.24847.1.S1_at--734--6375Chr10:15112227..15112251 (25 bp)
GATCCGTTGTCTACCGACCCAAGAG
NONE
Target Sequence 
GTGCCGCTTCCGAGTTCGTCCGCGTGCACTGCCCTCGGTCTCCCCTAGATGCGTCATCCTCAAGCTCATCCAATCCATGA
ACGCCCGAAGTGTCATTGTCCAGCTCGTCGCCGGCATTGTCGGCTCATCCATCGGCCCTCAAATTCGCCCCGAAGCACCA
CCCTCGCGCTCGTTGCGGGCTCGCCTGAGTGCCGACCCGCTCCTCCTTGCCCTGGATCCGTTGTCTACCGACCCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis