Browse Element(s) Details


Os.20428.1.S1_at

Description gb:AK100349.1
DB_XREF= gi:32985558
TID=Os.20428.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082M21, full insert sequence.
FL= gb:AK100349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5327011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20428.1.S1_at--1060--8111Chr02:32604527..32604551 (25 bp)
GGACTCTCAAGATCGGTTGCTCAGG
LOC_Os02g53270
Os.20428.1.S1_at--954--6671Chr02:32604542..32604566 (25 bp)
GTTGCTCAGGAACCTTTATGTCGCA
LOC_Os02g53270
Os.20428.1.S1_at--430--6611Chr02:32604609..32604633 (25 bp)
GATTGGCAATCTCGTGACATATTAA
LOC_Os02g53270
Os.20428.1.S1_at--1110--6531Chr02:32604637..32604661 (25 bp)
GATTTATTTTCTGTTCCTGGAGACA
LOC_Os02g53270
Os.20428.1.S1_at--270--2091Chr02:32604659..32604683 (25 bp)
ACATATGTTCGGCTTGTGTCTGGTC
LOC_Os02g53270
Os.20428.1.S1_at--805--8711Chr02:32604675..32604699 (25 bp)
TGTCTGGTCACTCCAATCCTTGTAT
LOC_Os02g53270
Os.20428.1.S1_at--541--571Chr02:32604690..32604714 (25 bp)
ATCCTTGTATTTGGTTGGCTCATGC
LOC_Os02g53270
Os.20428.1.S1_at--961--8311Chr02:32604706..32604730 (25 bp)
GGCTCATGCTTCTTGGAAGGGCACA
LOC_Os02g53270
Os.20428.1.S1_at--234--10131Chr02:32604977..32605001 (25 bp)
TATGCAGTACCCTAGCGTCAATCAA
LOC_Os02g53270
Os.20428.1.S1_at--376--7151Chr02:32605015..32605039 (25 bp)
GTCTTCATTTATCATCTTTCTGCGA
LOC_Os02g53270
Os.20428.1.S1_at--95--4631Chr02:32605036..32605060 (25 bp)
GCGATTAAACGATGCTTGTCCTTTT
LOC_Os02g53270
Target Sequence 
GGACTCTCAAGATCGGTTGCTCAGGAACCTTTATGTCGCATGGAATGTGATCTGGACACGATGTANATCCAAAGCATCTT
TAGATTGGCAATCTCGTGACATATTAATGTGATTTATTTTCTGTTCCTGGAGACATATGTTCGGCTTGTGTCTGGTCACT
CCAATCCTTGTATTTGGTTGGCTCATGCTTCTTGGAAGGGCACAACTGCAGGAAGAGGTCAATATGAAGTAATGATGGAG
GAAAGCATAGAGCGGCAGCATAAAGTTGAAATTGTCTTGCCAAAATGGAACATCAAAAGCTGGCAGAGAATCGAGTTGAT
AAATAAAANATTACTGCGTCTTCAGGTTGGGGGTATTTATGCAGTACCCTAGCGTCAATCAAAAGCCTGGAGTATGTCTT
CATTTATCATCTTTCTGCGATTAAACGATGCTTGTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis