Browse Element(s) Details


Os.14402.1.S1_at

Description gb:CB671217
DB_XREF= gi:29674942
DB_XREF=OSJNEe04K24.r
CLONE=OSJNEe04K24
TID=Os.14402.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.14402 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565759.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5321011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14402.1.S1_at--621--3551Chr02:32570531..32570843 (25 bp)
CATCGGCTTAGCATTTACAACCACA
LOC_Os02g53210
Os.14402.1.S1_at--282--131Chr02:32570507..32570531 (25 bp)
ATTCAAGTATTTCTCCGACGCCTAT
LOC_Os02g53210
Os.14402.1.S1_at--310--5811Chr02:32570491..32570515 (25 bp)
GACGCCTATCTCGTGTTTTAACTGG
LOC_Os02g53210
Os.14402.1.S1_at--169--1531Chr02:32570461..32570485 (25 bp)
AGCATACCACCTCTTGTGAAGGCAC
LOC_Os02g53210
Os.14402.1.S1_at--453--2491Chr02:32569871..32569895 (25 bp)
AACAGTGGGCCTGGCAACTTGACTT
LOC_Os02g53210
Os.14402.1.S1_at--1069--9631Chr02:32569828..32569852 (25 bp)
TCAGGGAGCCTATGCGCGGGATAAA
LOC_Os02g53210
Os.14402.1.S1_at--654--9811Chr02:32569753..32569777 (25 bp)
TAACACAGAAGCATACCCGGTCGAC
LOC_Os02g53210
Os.14402.1.S1_at--323--9631Chr02:32569645..32569669 (25 bp)
TCATGTATCCTATCTGTACCAGCGG
LOC_Os02g53210
Os.14402.1.S1_at--16--2611Chr02:32569604..32569628 (25 bp)
AACGCCGCAATTGTACATACGCAGA
LOC_Os02g53210
Os.14402.1.S1_at--708--1191Chr02:32569539..32569563 (25 bp)
AGTAGGTTTGTGCATATCCTCCCGA
LOC_Os02g53210
Os.14402.1.S1_at--254--10151Chr02:32569525..32569549 (25 bp)
TATCCTCCCGAAATGTTCCTCTGAA
LOC_Os02g53210
Target Sequence 
CATCGGCTTAGCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACTGGTGCACAGCATACCAC
CTCTTGTGAAGGCACACNGGAGGTATTCTAGTCAAAATCATCCTCAAAGGAAAACTCACACGAGATAACAGTGGGCCTGG
CAACTTGACTTGCCAGGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAGTCGTGAGCTGAAA
AAAGTGTGAACAGGAAACATTTACTAACACAGAAGCATACCCGGTCGACTGGACAGACCTTCAAAACAACTTGCTTGGAA
TTGGAAGAGTCATGTACAGGTTTATACCGAATGTTTCATCACATAGCTTTAATCATGTATCCTATCTGTACCAGCGGGCA
AGTAGTGAAACAAAACGCCGCAATTGTACATACGCAGAATCTGTTGTTTGTTCATTCTAATGGCTTGTATAGCAGCCTAG
TAGGTTTGTGCATATCCTCCCGAAATGTTCCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis