Browse Element(s) Details


Os.11714.1.S1_at

Description gb:AK102185.1
DB_XREF= gi:32987394
TID=Os.11714.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086N13, full insert sequence.
FL= gb:AK058571.1 gb:AK102185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5320010/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11714.1.S1_at--465--7331Chr02:32562678..32562702 (25 bp)
GTGCTTCGAGCCGAACACCATGGTC
LOC_Os02g53200
Os.11714.1.S1_at--930--9931Chr02:32562575..32562596 (22 bp)
TACGTCGTCAACCAAGCGCCAAAGA
LOC_Os02g53200
Os.11714.1.S1_at--135--3851Chr02:32561349..32561373 (25 bp)
CTGCATGTTTGCTGCGGCGTAGAAA
LOC_Os02g53200
Os.11714.1.S1_at--852--1951Chr02:32561318..32561342 (25 bp)
ACTGTAGTAGCTGTACCTCTTTCTT
LOC_Os02g53200
Os.11714.1.S1_at--139--6991Chr02:32561306..32561330 (25 bp)
GTACCTCTTTCTTTTTGCAGCTTTG
LOC_Os02g53200
Os.11714.1.S1_at--520--3671Chr02:32561296..32561320 (25 bp)
CTTTTTGCAGCTTTGGCTAATGGTG
LOC_Os02g53200
Os.11714.1.S1_at--520--7671Chr02:32561270..32561294 (25 bp)
GGGATATCTTTGTTTAGTCCATGTA
LOC_Os02g53200
Os.11714.1.S1_at--653--8771Chr02:32561260..32561284 (25 bp)
TGTTTAGTCCATGTAACTACGCTGG
LOC_Os02g53200
Os.11714.1.S1_at--1158--2011Chr02:32561245..32561269 (25 bp)
ACTACGCTGGAGTATGGAGTATTAC
LOC_Os02g53200
Os.11714.1.S1_at--703--5711Chr02:32561189..32561213 (25 bp)
GACTGATTTGTACTAGCCATTGGTT
LOC_Os02g53200
Os.11714.1.S1_at--301--31Chr02:32561171..32561195 (25 bp)
ATTGGTTGGCCATGTGAGTGACCCA
NONE
Target Sequence 
GTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGNCCGCACCATTG
GCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCNTCGACGGTC
TGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAA
AATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCNTTGCTNTTCTTTTCCAGTTTTCCTCCC
TTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATNACTGTAGTA
GCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATG
GAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTACTAGCCATTGGTTGGCCATGTGAGTGAC
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis