Browse Element(s) Details


Os.12268.1.S1_at

Description gb:AF049889.1
DB_XREF= gi:2952327
GEN=ACO2
TID=Os.12268.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12268 (NCBI UniGene Cluster)
DEF=Oryza sativa 1-aminocyclopropane-1-carboxylate oxidase (ACO2) mRNA, complete cds.
PROD=1-aminocyclopropane-1-carboxylate oxidase
FL= gb:AF049889.1 gb:AK071557.1 gb:AK103969.1 gb:AK066805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5318011/111-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12268.1.S1_at--89--551Chr02:32556392..32556416 (25 bp)
ATCGCCACCGCTTGATAAGGATCAG
LOC_Os02g53180
Os.12268.1.S1_at--561--2911Chr02:32556408..32556432 (25 bp)
AAGGATCAGACTTCACTAGCTACGG
LOC_Os02g53180
Os.12268.1.S1_at--679--9151Chr02:32556434..32556458 (25 bp)
TGCGCGTGCCATGATCCAGATATAT
LOC_Os02g53180
Os.12268.1.S1_at--487--9311Chr02:32556498..32556522 (25 bp)
TCCCGTGTTTTTCTGCGTAATGTTT
LOC_Os02g53180
Os.12268.1.S1_at--1132--1991Chr02:32556537..32556561 (25 bp)
ACTACTAGTGTGTGTACGTAACCTG
LOC_Os02g53180
Os.12268.1.S1_at--289--7071Chr02:32556567..32556591 (25 bp)
GTAAGTATCGCGTCAAGTACTCAAG
LOC_Os02g53180
Os.12268.1.S1_at--400--9731Chr02:32556587..32556611 (25 bp)
TCAAGTGTGTGTAACGGGCGCTCTA
LOC_Os02g53180
Os.12268.1.S1_at--374--7571Chr02:32556602..32556626 (25 bp)
GGGCGCTCTAATCGTATTGTTCTGT
LOC_Os02g53180
Os.12268.1.S1_at--1067--10791Chr02:32556618..32556642 (25 bp)
TTGTTCTGTGCTTCAATGGCTACCA
LOC_Os02g53180
Os.12268.1.S1_at--936--851Chr02:32556633..32556657 (25 bp)
ATGGCTACCACGTTAGATGGGCCTT
LOC_Os02g53180
Os.12268.1.S1_at--768--10031Chr02:32556646..32556670 (25 bp)
TAGATGGGCCTTGTGCTAATGTTGT
LOC_Os02g53180
Target Sequence 
ATCGCCACCGCTTGATAAGGATCAGACTTCACTAGCTACGGCTGCGCGTGCCATGATCCAGATATATGGGATGTGTACGG
TAGTGTACGTGGTGCTGTACATGCCGTCCCGTGTTTTTCTGCGTAATGTTTTTACGTACTAGACTACTACTAGTGTGTGT
ACGTAACCTGGGGATGTAAGTATCGCGTCAAGTACTCAAGTGTGTGTAACGGGCGCTCTAATCGTATTGTTCTGTGCTTC
AATGGCTACCACGTTAGATGGGCCTTGTGCTAATGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis