Browse Element(s) Details


Os.6228.1.S1_at

Description gb:AK071059.1
DB_XREF= gi:32981082
TID=Os.6228.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081E11, full insert sequence.
FL= gb:AK071059.1 gb:AK066823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5315011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6228.1.S1_at--458--2491Chr02:32529946..32529970 (25 bp)
AACAGTAGTAGCTCGGCGTTCCTTA
LOC_Os02g53150
Os.6228.1.S1_at--227--2871Chr02:32529908..32529932 (25 bp)
AAGTGTACCTGGTCATTACCTGCAA
LOC_Os02g53150
Os.6228.1.S1_at--869--7991Chr02:32529829..32529853 (25 bp)
GGATGTTCTATGTTCTTGTCTAGGC
LOC_Os02g53150
Os.6228.1.S1_at--291--3691Chr02:32529810..32529834 (25 bp)
CTAGGCAATTCAGTCAGCGTCTCTT
LOC_Os02g53150
Os.6228.1.S1_at--749--3051Chr02:32529685..32529709 (25 bp)
AATCGGTCATCGAATCAGTCCTGAA
LOC_Os02g53150
Os.6228.1.S1_at--474--9251Chr02:32529667..32529691 (25 bp)
TCCTGAACTCTTGACTCCTTTATAA
LOC_Os02g53150
Os.6228.1.S1_at--1146--5411Chr02:32529639..32529663 (25 bp)
GAACCCCAGTCCTCGTTAAGTATGG
LOC_Os02g53150
Os.6228.1.S1_at--608--4271Chr02:32529587..32529611 (25 bp)
CCTGAGGTCTCTGATATGGCAACTT
LOC_Os02g53150
Os.6228.1.S1_at--720--851Chr02:32529572..32529596 (25 bp)
ATGGCAACTTGTCGCGTGATCAGTG
LOC_Os02g53150
Os.6228.1.S1_at--250--8851Chr02:32529556..32529580 (25 bp)
TGATCAGTGATCGTCTCTGTCTAGC
LOC_Os02g53150
Os.6228.1.S1_at--1112--9991Chr02:32529535..32529559 (25 bp)
TAGCTGACATCTCTCCTGGATGAAA
LOC_Os02g53150
Target Sequence 
AACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGG
CATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCT
TNTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGT
GATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCT
CGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGA
TCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis