Browse Element(s) Details


OsAffx.24843.1.S1_at

Description tigr:9630.m05250
TID=OsAffx.24843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5316011/11Phosphoprotein Phosphatase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24843.1.S1_at--326--3651Chr02:32536095..32536119 (25 bp)
CTTCAGCATTGAGCCGTGGGTGGAC
LOC_Os02g53160
OsAffx.24843.1.S1_at--945--4511Chr02:32536050..32536074 (25 bp)
GCCGCTTAACTTCGCCGAGGTGAAC
LOC_Os02g53160
OsAffx.24843.1.S1_at--707--2691Chr02:32535530..32535989 (25 bp)
AAGCTACGCTCGATCGTGTACCTGT
LOC_Os02g53160
OsAffx.24843.1.S1_at--468--8071Chr02:32535791..32535815 (25 bp)
GGAGCAGAACGGCATCAAGCTTCAC
LOC_Os02g53160
OsAffx.24843.1.S1_at--216--4951Chr02:32535780..32535804 (25 bp)
GCATCAAGCTTCACCAGTTCGGTAT
LOC_Os02g53160
OsAffx.24843.1.S1_at--903--1711Chr02:32535768..32535792 (25 bp)
ACCAGTTCGGTATTGACGGCAGCAA
LOC_Os02g53160
OsAffx.24843.1.S1_at--1106--5891Chr02:32532933..32532957 (25 bp)
GAGCTGCTTGTAAACATCCCTGAAG
LOC_Os02g53160
OsAffx.24843.1.S1_at--853--551Chr02:32532903..32532927 (25 bp)
ATCCGAGAAGCACTCAAAGTTATTC
LOC_Os02g53160
OsAffx.24843.1.S1_at--806--1891Chr02:32532789..32532813 (25 bp)
ACGTAAGGAATCAACCGGTGCTCAT
LOC_Os02g53160
OsAffx.24843.1.S1_at--330--8211Chr02:32532160..32532184 (25 bp)
GGAATGTGCTTATGTGCAACAACAA
LOC_Os02g53160
OsAffx.24843.1.S1_at--820--991Chr02:32532100..32532124 (25 bp)
AGGATGGATTGCACTGAATACTCGC
LOC_Os02g53160
Target Sequence 
CTTCAGCATTGAGCCGTGGGTGGACGCCGCGGCGGTGCTGGTGCCGCCGCTTAACTTCGCCGAGGTGAACGACGGCATCT
TCCGCTCCGGGTTCCCCGCCGCCGACAACTTCGCGTTCCTCCTCTCCCTCAAGCTACGCTCGATCGTGTACCTGTGCCCG
GAGCCGTACCCGGAGGAGAACACGCGGTTTCTGGAGCAGAACGGCATCAAGCTTCACCAGTTCGGTATTGACGGCAGCAA
GGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTTATTCTTGACGTAAGGAATCAACCGGTGC
TCATCCACTGCAAGAGAGGCAAGGAATGTGCTTATGTGCAACAACAAAAGATCTTCTTTTGGTGCAAAAATTACCTGTTA
ACAGGATGGATTGCACTGAATACTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis