Browse Element(s) Details


OsAffx.3052.2.S1_at

Description tigr:9630.m05251
TID=OsAffx.3052.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5317010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3052.2.S1_at--921--8071NONE
GGAGCTTTGCGATCCGAACAGGACA
NONE
OsAffx.3052.2.S1_at--526--5831Chr02:32539265..32539289 (25 bp)
GACCGGCGCCAATCTTGGAGAGGAT
LOC_Os02g53170
OsAffx.3052.2.S1_at--685--6171Chr02:32539246..32539270 (25 bp)
GAGGATGTTCGTTTCGTGCGTGCAC
LOC_Os02g53170
OsAffx.3052.2.S1_at--1135--2311Chr02:32539208..32539232 (25 bp)
AAAGTGCCCGAGGTTGCTGTACCAT
LOC_Os02g53170
OsAffx.3052.2.S1_at--818--6091Chr02:32538398..32538422 (25 bp)
GAGTCTATACGGAGCAAACCACTTG
LOC_Os02g53170
OsAffx.3052.2.S1_at--553--2651Chr02:32538382..32538406 (25 bp)
AACCACTTGATAACTTGCACTTGCA
LOC_Os02g53170
OsAffx.3052.2.S1_at--541--9031Chr02:32538367..32538391 (25 bp)
TGCACTTGCAGCTTACGGCGATGAT
LOC_Os02g53170
OsAffx.3052.2.S1_at--67--5711Chr02:32538342..32538366 (25 bp)
GACTAGTGAAGCCTTCTGCGGCAAA
LOC_Os02g53170
OsAffx.3052.2.S1_at--339--8951Chr02:32538307..32538331 (25 bp)
TGACTGTTACAGTGTGCCCTTCATT
LOC_Os02g53170
OsAffx.3052.2.S1_at--439--9171Chr02:32538293..32538317 (25 bp)
TGCCCTTCATTGTCTGGAGTGCAGA
LOC_Os02g53170
OsAffx.3052.2.S1_at--520--6511Chr02:32538264..32538288 (25 bp)
GATATCTGCAGGGTTCCAAAGTACT
LOC_Os02g53170
Target Sequence 
GGAGCTTTGCGATCCGAACAGGACACTGGATGCGGATGGATTTGGTAATCAAAAGGAAAAGGGGTACCTGACCGGCGCCA
ATCTTGGAGAGGATGTTCGTTTCGTGCGTGCACCGTGCGCCTTTGTAAAGTGCCCGAGGTTGCTGTACCATTGGAGGATG
AAGGATGAGCATTTGGAGTCTATACGGAGCAAACCACTTGATAACTTGCACTTGCAGCTTACGGCGATGATGACTAGTGA
AGCCTTCTGCGGCAAAGCGGCAGTAGTGACTGTTACAGTGTGCCCTTCATTGTCTGGAGTGCAGAAAATGATATCTGCAG
GGTTCCAAAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3052.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis