Browse Element(s) Details


Os.3433.1.S1_at

Description gb:AB040053.1
DB_XREF= gi:7592843
GEN=rCOP1
TID=Os.3433.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3433 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) rCOP1 mRNA for COP1, complete cds.
PROD=COP1
FL= gb:AK111614.1 gb:AK102740.1 gb:AK112098.1 gb:AB040053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5314011/11Ubiquitin ligase protein COP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009640biological_processphotomorphogenesis
GO:0009647biological_processskotomorphogenesis
GO:0010119biological_processregulation of stomatal movement
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3433.1.S1_at--333--2751Chr02:32522918..32522942 (25 bp)
AAGAACTTTGTTGGGCTGTCTGTAA
LOC_Os02g53140
Os.3433.1.S1_at--338--351Chr02:32522893..32522917 (25 bp)
ATAACGAGTACATTGCCTGCGGGAG
LOC_Os02g53140
Os.3433.1.S1_at--925--6291Chr02:32522642..32522666 (25 bp)
GATGATCCTGGCTCTTATTTTATTA
LOC_Os02g53140
Os.3433.1.S1_at--221--1651Chr02:32522600..32522624 (25 bp)
AGCGATAGCCCTACCATGTTAACTG
LOC_Os02g53140
Os.3433.1.S1_at--910--1971Chr02:32522579..32522603 (25 bp)
ACTGCTAACAGTCAGGGCACCATTA
LOC_Os02g53140
Os.3433.1.S1_at--259--1231Chr02:32522553..32522577 (25 bp)
AGTTCTTGTACTTGCTCCTTGATGA
LOC_Os02g53140
Os.3433.1.S1_at--285--7511Chr02:32522523..32522547 (25 bp)
GTGGTTTTCATGAGATCCCTAGATA
LOC_Os02g53140
Os.3433.1.S1_at--978--10171Chr02:32522482..32522506 (25 bp)
TATACAGTTGTTTCCTTTTCGTGCC
LOC_Os02g53140
Os.3433.1.S1_at--399--10391Chr02:32522467..32522491 (25 bp)
TTTTCGTGCCATTATACCCCAAATG
LOC_Os02g53140
Os.3433.1.S1_at--330--9911Chr02:32522429..32522453 (25 bp)
TACTGATCTCCAACATAGGGCGCAA
LOC_Os02g53140
Os.3433.1.S1_at--567--3731Chr02:32522386..32522410 (25 bp)
CTGACATAGGGTTTCGAGGGCTCGA
LOC_Os02g53140
Target Sequence 
AAGAACTTTGTTGGGCTGTCTGTAAATAACGAGTACATTGCCTGCGGGAGTGAAACGAATGAGGTTTTTGTTTACCACAA
GGCTATCTCAAAACCTGCTGCCAACCACAGATTTGTATCATCTGATCTCGATGATGCAGATGATGATCCTGGCTCTTATT
TTATTAGCGCAGTCTGCTGGAAGAGCGATAGCCCTACCATGTTAACTGCTAACAGTCAGGGCACCATTAAAGTTCTTGTA
CTTGCTCCTTGATGAAATCAGTGGTTTTCATGAGATCCCTAGATAGCTTGTATATTTGATGTATACAGTTGTTTCCTTTT
CGTGCCATTATACCCCAAATGGGAGTGGAGGTATTACTGATCTCCAACATAGGGCGCAAAGTTTTGAAGGTAATCAGCTG
ACATAGGGTTTCGAGGGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis