Browse Element(s) Details


OsAffx.25595.1.S1_x_at

Description tigr:9630.m05246
TID=OsAffx.25595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5312011/11separase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25595.1.S1_x_at--112--371Chr02:32494269..32494293 (25 bp)
ATAATTGCGCAGCTGCTCTTCTTAT
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--976--2311Chr02:32494216..32494240 (25 bp)
AAAGGGTGTTATGCTCCTCAAGGAG
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--135--8091Chr02:32494195..32494219 (25 bp)
GGAGCCCCTTTATCATATTTATCTG
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--1041--8571Chr02:32494169..32494193 (25 bp)
TGGTTCTCCAGCTGTTATCGCAAAT
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--1034--5131Chr02:32494107..32494131 (25 bp)
GCAAAGCATTGCTCGGTTCATGGTT
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--828--2231Chr02:32494058..32494082 (25 bp)
AAATTGCTCGAAGTGTTGCCAGCTA
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--534--211Chr02:32494025..32494049 (25 bp)
ATTTGAATCCATGACCATTGCTGTG
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--513--1871Chr02:32493674..32493698 (25 bp)
ACGAGCTCGCATGTGCTTGTGATGT
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--278--7411Chr02:32493647..32493671 (25 bp)
GTGATATTCATTCGCCATCTGGGAA
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--512--6351Chr02:32493591..32493615 (25 bp)
GATGCCTTCGATCGACGGTTTACTA
LOC_Os02g53120
OsAffx.25595.1.S1_x_at--192--8531Chr02:32493554..32493578 (25 bp)
TGGAAATGCTCATCGACCGTCGTGA
LOC_Os02g53120
Target Sequence 
ATAATTGCGCAGCTGCTCTTCTTATGGGTTGCAGTAGTGGAACATTGCGTTGCAAAGGGTGTTATGCTCCTCAAGGAGCC
CCTTTATCATATTTATCTGCTGGTTCTCCAGCTGTTATCGCAAATCTCTGGGATGTGTCAGATAAGGATATTGATCGATT
CAGCAAAGCATTGCTCGGTTCATGGTTGCAAGAGAATTTTGTAGCGGCCAAAAATTGCTCGAAGTGTTGCCAGCTAACAC
GAGAATTTGAATCCATGACCATTGCTGTGGAGGGTAATGGCAGGCCGAGGCGAAGAGGCACACGAGGGAAGAAGTCCGAA
CGAATGAATAACTGTAAAGTGAGCATTCTTGGCACCGCATTGCACGAGCTCGCATGTGCTTGTGATGTTTGTGATATTCA
TTCGCCATCTGGGAATGTAGATCAGGCAAGATGGTGTGAATTGGCAGATGCCTTCGATCGACGGTTTACTAGAAGATCTG
CTGTGGAAATGCTCATCGACCGTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25595.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis