Browse Element(s) Details


Os.54699.1.A1_at

Description gb:AK106494.1
DB_XREF= gi:32991703
TID=Os.54699.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C02, full insert sequence.
FL= gb:AK106494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5312011/11separase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54699.1.A1_at--621--7531Chr02:32493918..32493942 (25 bp)
GTGGCAACAGGCGAGTAGCTTCATA
LOC_Os02g53120
Os.54699.1.A1_at--1146--8971Chr02:32493887..32493911 (25 bp)
TGAAGCTAGGCGTGCTTGCAGGCTT
LOC_Os02g53120
Os.54699.1.A1_at--318--9051Chr02:32493871..32493895 (25 bp)
TGCAGGCTTCCTCTTATGATCGGTG
LOC_Os02g53120
Os.54699.1.A1_at--1096--3751Chr02:32493861..32493885 (25 bp)
CTCTTATGATCGGTGGATCTCCCGT
LOC_Os02g53120
Os.54699.1.A1_at--714--9931Chr02:32493832..32493856 (25 bp)
TACGGTGTGCCTACCATCATTAGGA
LOC_Os02g53120
Os.54699.1.A1_at--109--5531Chr02:32493809..32493833 (25 bp)
GAAAAAGTAACTGCCCTGTGCTCAA
LOC_Os02g53120
Os.54699.1.A1_at--451--2551Chr02:32493801..32493825 (25 bp)
AACTGCCCTGTGCTCAAGTGGGAGA
LOC_Os02g53120
Os.54699.1.A1_at--968--3211Chr02:32493787..32493811 (25 bp)
CAAGTGGGAGATTTTGGGTGTCCAA
LOC_Os02g53120
Os.54699.1.A1_at--143--4291Chr02:32493758..32493782 (25 bp)
CCTCCTGGTTCTGGGCATTGAGCAA
LOC_Os02g53120
Os.54699.1.A1_at--1027--3891Chr02:32493748..32493772 (25 bp)
CTGGGCATTGAGCAATCGATGACAT
LOC_Os02g53120
Os.54699.1.A1_at--18--2591Chr02:32493375..32493399 (25 bp)
AACGATGAAGTGTCGAACTCAATGA
LOC_Os02g53120
Target Sequence 
GTGGCAACAGGCGAGTAGCTTCATATTTAAGTGAAGCTAGGCGTGCTTGCAGGCTTCCTCTTATGATCGGTGGATCTCCC
GTNTGNTACGGTGTGCCTACCATCATTAGGAAAAAGTAACTGCCCTGTGCTCAAGTGGGAGATTTTGGGTGTCCAATGCN
CCTCCTGGTTCTGGGCATTGAGCAATCGATGACATGATGGTGTATGGCGTNTGACAGAAGTGAGCATTCTTGGCACCGCA
TTGCACGAGCTCGCATGTGCTTGTGATGTTTGTGATATTCATTCGCCATCTGGGAATGTAGATCAGGCAAGATGGTGTGA
ATTGGCAGATGCCTTCGATCGACGGTTTACTAGAAGATCTGCTGTGGAAATGCTCATCGACCGTCGTGAAGAGATACAAA
TCTTTCTTCTTGCAAGTATATACAAGTAAATGATTATATTAATATATGCTCTGTAGAATNTAGTTATGAACAAAATTGTA
ATGTTATGTTACGGGAAATCATTTAGAGCATGTATGTTGATGTCATAAAGTGTAGGGCNCTTCAACGATGAAGTGTCGAA
CTCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54699.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis