Browse Element(s) Details


Os.54146.1.S1_at

Description gb:AK102178.1
DB_XREF= gi:32987387
TID=Os.54146.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086L13, full insert sequence.
FL= gb:AK102602.1 gb:AK102178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5313011/11Nitrate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004128molecular_functioncytochrome-b5 reductase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54146.1.S1_at--778--1711Chr02:32508440..32508464 (25 bp)
ACCAGCCCGACGACGGAACGGAGAT
LOC_Os02g53130
Os.54146.1.S1_at--389--1871Chr02:32508257..32508281 (25 bp)
ACGAGCGGACGCTCAGGGAGCACCT
LOC_Os02g53130
Os.54146.1.S1_at--1047--6251Chr02:32508148..32508172 (25 bp)
GATGGGCTATGACCTCGACAAGTCC
LOC_Os02g53130
Os.54146.1.S1_at--385--9271Chr02:32508126..32508150 (25 bp)
TCCTGCCTCGTCTTCTGAAACGTGA
LOC_Os02g53130
Os.54146.1.S1_at--1024--2371Chr02:32508109..32508133 (25 bp)
AAACGTGACGTGTGTAGTGTACGAC
LOC_Os02g53130
Os.54146.1.S1_at--42--971Chr02:32508094..32508118 (25 bp)
AGTGTACGACACTGCAAAAACTGTA
LOC_Os02g53130
Os.54146.1.S1_at--1146--7011Chr02:32508072..32508096 (25 bp)
GTACATATACGTAGCATAGTTGCAT
LOC_Os02g53130
Os.54146.1.S1_at--26--3291Chr02:32508036..32508060 (25 bp)
CAAAGTTTGGAGCTCTCTCGAGTTC
LOC_Os02g53130
Os.54146.1.S1_at--553--9511Chr02:32508021..32508045 (25 bp)
TCTCGAGTTCCGGTACATCGGAGTA
LOC_Os02g53130
Os.54146.1.S1_at--1132--7991Chr02:32507942..32507966 (25 bp)
GGATGGTTGTGCACATGGTTCATTT
LOC_Os02g53130
Os.54146.1.S1_at--687--231Chr02:32507903..32507927 (25 bp)
ATATTTCATTGGTCATACTAGAGCA
LOC_Os02g53130
Target Sequence 
ACCAGCCCGACGACGGAACGGAGATGCACGTGGTGTACGCGAACCGGACGGAGGACGACATGCTCCTCCGGGAGGAGATC
GACCGGTGGGCGGCGGCGCACCCGGCGCGGCTCAAGGTGTGGTACGTGGTGAGCAAGGTGGCGCGGCCGGAGGACGGGTG
GGAGTACGGCGTGGGGAGGGTGGACGAGCGGACGCTCAGGGAGCACCTGCCGCCGGGCGACGGCGAGACGCTCGCGCTCG
TGTGCGGGCCGCCGGCGATGGTCGAGTGCACGGTGCGGCCGGGCCTGGAGAAGATGGGCTATGACCTCGACAAGTCCTGC
CTCGTCTTCTGAAACGTGACGTGTGTAGTGTACGACACTGCAAAAACTGTACATATACGTAGCATAGTTGCATAAATTTT
AATTCAAAGTTTGGAGCTCTCTCGAGTTCCGGTACATCGGAGTAGCGCGCGGCGGTCGCATTCGATGGCCATGGAAAAAG
TGTAGAGTGTAGATTGATGGATGGTTGTGCACATGGTTCATTTGAGAATCAAGATGTATATTTCATTGGTCATACTAGAG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis