Browse Element(s) Details


OsAffx.12620.1.S1_at

Description tigr:9630.m05243
TID=OsAffx.12620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Avr9Cf-9 rapidly elicited protein 126
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5310011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed
LOC_Os02g53130Os.54146.1.S1_at11/112+32507875..32511286Nitrate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12620.1.S1_at--266--1051Chr02:32484892..32484916 (25 bp)
AGGTGCAGAGATGCCTCGAGGACAT
LOC_Os02g53100
OsAffx.12620.1.S1_at--462--6191Chr02:32484909..32484933 (25 bp)
GAGGACATGTCGATCCTGGTGACGA
LOC_Os02g53100
OsAffx.12620.1.S1_at--830--9331Chr02:32485110..32485134 (25 bp)
TCGCCGTTGCTAATGCCGGGCGCCA
LOC_Os02g53100
OsAffx.12620.1.S1_at--197--1471Chr02:32485156..32485180 (25 bp)
AGCATCTCAACCTGTTCGGGAATTC
LOC_Os02g53100
OsAffx.12620.1.S1_at--509--3231Chr02:32485163..32485187 (25 bp)
CAACCTGTTCGGGAATTCGCCGTCG
LOC_Os02g53100
OsAffx.12620.1.S1_at--416--7211Chr02:32485190..32485214 (25 bp)
GTCGTCTCTGCTAGCTCCGCAAGCG
LOC_Os02g53100
OsAffx.12620.1.S1_at--427--891Chr02:32485217..32485241 (25 bp)
AGGCTCCAGCAAGTACCCGTGGTCT
LOC_Os02g53100
OsAffx.12620.1.S1_at--601--3071Chr02:32485275..32485299 (25 bp)
AATAAGAGACCGTTCTGGAGCGCCG
LOC_Os02g53100
OsAffx.12620.1.S1_at--187--4671Chr02:32485350..32485374 (25 bp)
GCGGTGATGTCGGACCCGAACAAGT
LOC_Os02g53100
OsAffx.12620.1.S1_at--972--1751Chr02:32485363..32485387 (25 bp)
ACCCGAACAAGTTCTCGGCGGCGAT
LOC_Os02g53100
OsAffx.12620.1.S1_at--819--6951Chr02:32485429..32485453 (25 bp)
GTAGCAGCGGCAAGAGTAGTAGTAA
LOC_Os02g53100
Target Sequence 
AGGTGCAGAGATGCCTCGAGGACATGTCGATCCTGGTGACGACGTACGAGGGCACGCACAACCACCCGCTCCCCGTCGGC
GCCACCGCCATGGCGTCCACCACCTCCGCCGCGGCCACCTTCATGCTTCTCTCCAGCACCACCTCCTCCTCCTCCGTCTC
CGACGCCTCCGCCGCGCCGTCGTCGTCCTACCTCAGCCCGTACCTGCTCAACTCCGCCTCGCCGTTGCTAATGCCGGGCG
CCACCGGCGGCGGCGGCGGCATGCAGCATCTCAACCTGTTCGGGAATTCGCCGTCGTCGTCGTCTCTGCTAGCTCCGCAA
GCGCCAGGCTCCAGCAAGTACCCGTGGTCTCCGAACCACCCTCCGCTCGCCGGCGCCGGAGGTAATAAGAGACCGTTCTG
GAGCGCCGGCGGCGACGGGGACAAGCCGGCGCCGGCGGCATTGGCCGAGAACGTCGGCGCGGTGATGTCGGACCCGAACA
AGTTCTCGGCGGCGATCGCCGCGGCGATCAACAACTTCATGGGGAAAGACGGCGAGAGTAGCAGCGGCAAGAGTAGTAGT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis