Browse Element(s) Details


Os.3707.1.S1_at

Description gb:AB026563.1
DB_XREF= gi:8671501
GEN=OsPBA1
TID=Os.3707.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3707 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBA1 mRNA for beta 1 subunit of 20S proteasome, complete cds.
PROD=beta 1 subunit of 20S proteasome
FL= gb:AK059837.1 gb:AK104505.1 gb:AB026563.1 gb:AK103425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5306010/11Proteasome subunit beta type 6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53010NANA2+32435603..32436459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g53030Os.57338.1.S1_at11/112+32448682..32450136expressed protein
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3707.1.S1_at--809--191Chr02:32460408..32460831 (25 bp)
ATTTGCAATCGGAGGTTCAGGCTCT
LOC_Os02g53060
Os.3707.1.S1_at--981--10531Chr02:32460393..32460417 (25 bp)
TTCAGGCTCTAGTTACCTCTATGGA
LOC_Os02g53060
Os.3707.1.S1_at--778--1751Chr02:32460379..32460403 (25 bp)
ACCTCTATGGATTGCTTGACCACGA
LOC_Os02g53060
Os.3707.1.S1_at--1145--6691NONE
GTTCGTACCGTCACTATAAACGCAG
NONE
Os.3707.1.S1_at--982--9651Chr02:32459451..32459475 (25 bp)
TCACCCTGGAGACAAACTACAACTG
LOC_Os02g53060
Os.3707.1.S1_at--919--9271Chr02:32459364..32459388 (25 bp)
TCCGATGGTCCAATGAATCTGCCCT
LOC_Os02g53060
Os.3707.1.S1_at--15--3671Chr02:32459323..32459347 (25 bp)
CTTAAGCAACTTTCTTCTGTATCTG
LOC_Os02g53060
Os.3707.1.S1_at--654--9571Chr02:32459311..32459335 (25 bp)
TCTTCTGTATCTGACTTTCACTAGA
LOC_Os02g53060
Os.3707.1.S1_at--739--1471Chr02:32459265..32459289 (25 bp)
AGAATTATGTTCAGCTGTGCGCAAT
LOC_Os02g53060
Os.3707.1.S1_at--993--1611Chr02:32459253..32459277 (25 bp)
AGCTGTGCGCAATTATCTAGTGCAA
LOC_Os02g53060
Os.3707.1.S1_at--1148--1291Chr02:32459229..32459253 (25 bp)
AGATGCTTCTTGTGCTGTATGTAAT
LOC_Os02g53060
Target Sequence 
ATTTGCAATCGGAGGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGGCATGTCCCAGGAAG
AAGCTGAGAAGTTTGTGGTTAAGGTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTC
ACTATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCA
GAACTCGTTGCTGGACATACTTGCAGCTGGGAACCCTGATCCGATGGTCCAATGAATCTGCCCTCCAGCCATACACCTCC
CTTAAGCAACTTTCTTCTGTATCTGACTTTCACTAGATTTACTGAAGAACTGGACTGCAGAATTATGTTCAGCTGTGCGC
AATTATCTAGTGCAAGATGCTTCTTGTGCTGTATGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis