Browse Element(s) Details


Os.27200.2.S1_x_at

Description gb:AK073145.1
DB_XREF= gi:32983168
TID=Os.27200.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020C08, full insert sequence.
FL= gb:AK073145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5305011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53010NANA2+32435603..32436459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g53030Os.57338.1.S1_at11/112+32448682..32450136expressed protein
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27200.2.S1_x_at--619--7491Chr02:32457517..32457541 (25 bp)
GTGGTGACCACCATGCCGATGCGGC
LOC_Os02g53050
Os.27200.2.S1_x_at--612--871Chr02:32457433..32457457 (25 bp)
ATGGCCGAGCAGCTGATGCAGCACC
LOC_Os02g53050
Os.27200.2.S1_x_at--406--651Chr02:32457419..32457442 (24 bp)
ATGCAGCACCTGCTCGAGCTGGACA
LOC_Os02g53050
Os.27200.2.S1_x_at--220--3731Chr02:32457377..32457401 (25 bp)
CTACGTGCTGCTGTCGAACATCTAC
LOC_Os02g53050
Os.27200.2.S1_x_at--463--1911Chr02:32457249..32457273 (25 bp)
ACGTGCACGAGTTCGTCTCCGGCGA
LOC_Os02g53050
Os.27200.2.S1_x_at--373--7231Chr02:32457221..32457245 (25 bp)
GTCGCATCCACAGGCGGAGGAGATA
LOC_Os02g53050
Os.27200.2.S1_x_at--888--451Chr02:32457197..32457221 (25 bp)
ATCTCAGATGCTTGGGTTGCTCATG
LOC_Os02g53050
Os.27200.2.S1_x_at--697--10431Chr02:32457152..32457176 (25 bp)
TTATGACCATGTAATCGATTGCTTG
LOC_Os02g53050
Os.27200.2.S1_x_at--1140--7971Chr02:32457121..32457145 (25 bp)
GGATGAATTCAGACCCTGGAGACTG
LOC_Os02g53050
Os.27200.2.S1_x_at--540--6751Chr02:32457022..32457046 (25 bp)
GTTCAGTACATTTAGCTGTCCTGCC
LOC_Os02g53050
Os.27200.2.S1_x_at--38--191Chr02:32457013..32457037 (25 bp)
ATTTAGCTGTCCTGCCACTATGATT
LOC_Os02g53050
Target Sequence 
GTGGTGACCACCATGCCGATGCGGCCAAACGAGGTGGTGCTCGGCGCCCTCCTCGCCGGCTGCCGGATGCACGGGGACGT
CGGCATGGCCGAGCAGCTGATGCAGCACCTGCTCGAGCTGGACACCGGCGGCGACGCCAACTACGTGCTGCTGTCGAACA
TCTACGCCGCCGTCGGCAAGTGGGACGGCGCCGGGAAGGTCCGGAGCCTGATGAAGGCGCGGGGGCTGAGGAAGAGGCCG
GGCTACAGCGCCGTGGAGATCGACGGCGACGTGCACGAGTTCGTCTCCGGCGATCGGTCGCATCCACAGGCGGAGGAGAT
ATCTCAGATGCTTGGGTTGCTCATGCATGAGATGGCAGGGCATGATTATGACCATGTAATCGATTGCTTGGATGGGGGAT
GAATTCAGACCCTGGAGACTGGAGAATGCAGAAGACTGATATTCTGAAGTCAAAAGATAGCCGACGTTAGATTAGAGAAC
TGTTGTATATCAGTAGTTCAGTACATTTAGCTGTCCTGCCACTATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27200.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis