Browse Element(s) Details


Os.48041.1.A1_at

Description gb:AK111651.1
DB_XREF= gi:37988314
TID=Os.48041.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134B02, full insert sequence.
FL= gb:AK111651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5307011/11CPR5 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g53030Os.57338.1.S1_at11/112+32448682..32450136expressed protein
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009627biological_processsystemic acquired resistance
GO:0009868biological_processjasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010150biological_processleaf senescence
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48041.1.A1_at--791--8331Chr02:32464249..32464273 (25 bp)
GGCTGTGTTTTTCTTAGGTTGCTCA
LOC_Os02g53070
Os.48041.1.A1_at--333--7351Chr02:32464124..32464148 (25 bp)
GTGCAAGATGCTTCATTTCCGATAT
LOC_Os02g53070
Os.48041.1.A1_at--825--4291Chr02:32464045..32464069 (25 bp)
CCTCTTTTTTGTGGCTCTGATGCAT
LOC_Os02g53070
Os.48041.1.A1_at--797--7851Chr02:32463996..32464020 (25 bp)
GGTATGTTAGTTATTCTTTTCTGCA
LOC_Os02g53070
Os.48041.1.A1_at--505--231Chr02:32463972..32463996 (25 bp)
ATATTTGAGTTTTCTCTGCGGCTTC
LOC_Os02g53070
Os.48041.1.A1_at--24--9491Chr02:32463958..32463982 (25 bp)
TCTGCGGCTTCAAGACTTCAACTGA
LOC_Os02g53070
Os.48041.1.A1_at--317--1731Chr02:32463931..32463955 (25 bp)
ACCAGATTGGTGTACTTATTCAGGC
LOC_Os02g53070
Os.48041.1.A1_at--573--7071Chr02:32463874..32463898 (25 bp)
GTAATGCCAACATGTTCGATTTATT
LOC_Os02g53070
Os.48041.1.A1_at--741--3111Chr02:32463849..32463873 (25 bp)
AATTTCGTATTTTCTTGCCAATGTA
LOC_Os02g53070
Os.48041.1.A1_at--232--6931Chr02:32463822..32463846 (25 bp)
GTATGGGTCGTCTGATGTATGTACA
LOC_Os02g53070
Os.48041.1.A1_at--990--3431Chr02:32463718..32463742 (25 bp)
CAGTTTTGCTGTATGGATCAACCGG
LOC_Os02g53070
Target Sequence 
GGCTGTGTTTTTCTTAGGTTGCTCAGCTTNNTAGGTTGTTGGCNATGAGCAGAACTNGATTGTTGANACGTCAGATGAAG
CAGCCAAGCAGGTTTTTGNTTGTGTTCATTNGCGCACCATTATCAAGTGCAAGATGCTTCATTTCCGATATGTAATTTCT
NTTCATCAAGGAAGTTCAAAANGAATATCGTTTATACTTTAATTGCCTCTTTTTTGTGGCTCTGATGCATATGGGGCTNG
TCCTTCATATTGGGGGTATGTTAGTTATTCTTTTCTGCATATTTGAGTTTTCTCTGCGGCTTCAAGACTTCAACTGACAA
CCAGATTGGTGTACTTATTCAGGCANAGTTGATCGGTCTATGTAAAGTTGTAAATTGTAATGCCAACATGTTCGATTTAT
TAATTTCGTATTTTCTTGCCAATGTACAGTATGGGTCGTCTGATGTATGTACATGTAAATGGCTGTAAAACATTCAGCAG
GTGATGNACAGAGTCTTGGTTTGTAAATACTAAATTGAAGAGTTATTTTTTCCAGTTTTGCTGTATGGATCAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48041.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis