Browse Element(s) Details


Os.57338.1.S1_at

Description gb:AK111328.1
DB_XREF= gi:32996537
TID=Os.57338.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D12, full insert sequence.
FL= gb:AK111328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53010NANA2+32435603..32436459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g53030Os.57338.1.S1_at11/112+32448682..32450136expressed protein
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006970biological_processresponse to osmotic stress
GO:0046686biological_processresponse to cadmium ion
GO:0003700molecular_functiontranscription factor activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57338.1.S1_at--956--6091Chr02:32449872..32449896 (25 bp)
GAGTGAAGGTTCTTTGGTATCTGTA
LOC_Os02g53030
Os.57338.1.S1_at--112--5391Chr02:32449902..32449926 (25 bp)
GAAGCAACAGCTGGAGGAATCAACT
LOC_Os02g53030
Os.57338.1.S1_at--856--8011Chr02:32449914..32449938 (25 bp)
GGAGGAATCAACTATATCATCTTTA
LOC_Os02g53030
Os.57338.1.S1_at--168--10351Chr02:32449935..32449959 (25 bp)
TTTATACAAGACAGATCCTCAATGG
LOC_Os02g53030
Os.57338.1.S1_at--515--6371Chr02:32449948..32449972 (25 bp)
GATCCTCAATGGATTGGCTTATCTG
LOC_Os02g53030
Os.57338.1.S1_at--949--8291Chr02:32449963..32449987 (25 bp)
GGCTTATCTGCATCATCATAATGTA
LOC_Os02g53030
Os.57338.1.S1_at--1017--7751Chr02:32449995..32450019 (25 bp)
GGTGATAACACATTATCTCCACAAA
LOC_Os02g53030
Os.57338.1.S1_at--10--3151Chr02:32450022..32450046 (25 bp)
AATTCTTGCTGCTGGCCCGGTCATT
LOC_Os02g53030
Os.57338.1.S1_at--730--9131Chr02:32450031..32450055 (25 bp)
TGCTGGCCCGGTCATTTGAAAATGT
LOC_Os02g53030
Os.57338.1.S1_at--947--1171Chr02:32450081..32450105 (25 bp)
AGTACAGATGTACAACTCTCGATCA
LOC_Os02g53030
Os.57338.1.S1_at--268--6271Chr02:32450087..32450111 (25 bp)
GATGTACAACTCTCGATCAAATGAC
LOC_Os02g53030
Target Sequence 
GAGTGAAGGTTCTTTGGTATCTGTATATGAGAAGCAACAGCTGGAGGAATCAACTATATCATCTTTATACAAGACAGATC
CTCAATGGATTGGCTTATCTGCATCATCATAATGTAATGCATAGGTGATAACACATTATCTCCACAAAAAAATTCTTGCT
GCTGGCCCGGTCATTTGAAAATGTACTTGTTATAGTAGTGATCAAGTTAAGTACAGATGTACAACTCTCGATCAAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis