Browse Element(s) Details


Os.53232.1.S1_at

Description gb:AK071492.1
DB_XREF= gi:32981515
TID=Os.53232.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099E03, full insert sequence.
FL= gb:AK071492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5326011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53232.1.S1_at--179--6091Chr02:32593528..32593625 (25 bp)
GAGTAGATCCACTGATTGGGCTTGA
LOC_Os02g53260
Os.53232.1.S1_at--272--3511Chr02:32593652..32593676 (25 bp)
CATGTGAATCTGAAGCTAAGTCCAA
LOC_Os02g53260
Os.53232.1.S1_at--1072--5291Chr02:32593966..32593990 (25 bp)
GAAGGCAACTGAAAACTCCCTGCGC
LOC_Os02g53260
Os.53232.1.S1_at--744--4191Chr02:32593983..32594007 (25 bp)
CCCTGCGCAATGACCAATCTTGTTA
LOC_Os02g53260
Os.53232.1.S1_at--411--7991Chr02:32594025..32594049 (25 bp)
GGATGTTGTTCTCCACTACAGTTTT
LOC_Os02g53260
Os.53232.1.S1_at--742--3711Chr02:32594040..32594064 (25 bp)
CTACAGTTTTGACACCTTACAGGGT
LOC_Os02g53260
Os.53232.1.S1_at--675--7691Chr02:32594061..32594085 (25 bp)
GGGTACAGCACTACAGCTCATGCTT
LOC_Os02g53260
Os.53232.1.S1_at--407--8911Chr02:32594085..32594109 (25 bp)
TGAGCGGCCGCATATCGTCAGGACA
LOC_Os02g53260
Os.53232.1.S1_at--27--5651Chr02:32594106..32594130 (25 bp)
GACACCATGTTATCGCAATGCATTC
LOC_Os02g53260
Os.53232.1.S1_at--819--10271Chr02:32594145..32594169 (25 bp)
TTTGCACTGTTCTTGTCTGAATGAA
LOC_Os02g53260
Os.53232.1.S1_at--809--6371Chr02:32594173..32594197 (25 bp)
GATCCTGCTAATCCATCCTGGGAAA
LOC_Os02g53260
Target Sequence 
GAGTAGATCCACTGATTGGGCTTGAAAAAAACTATGAGATTTTGTGCAAGGCATGTGAATCTGAAGCTAAGTCCAAATTA
GAGGAAGGCAACTGAAAACTCCCTGCGCAATGACCAATCTTGTTAAAATGTGATGTGATGATGGATGTTGTTCTCCACTA
CAGTTTTGACACCTTACAGGGTACAGCACTACAGCTCATGCTTGAGCGGCCGCATATCGTCAGGACACCATGTTATCGCA
ATGCATTCAGATGTATTGCACATTTGCACTGTTCTTGTCTGAATGAAGCTGATCCTGCTAATCCATCCTGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis