Browse Element(s) Details


OsAffx.24845.1.S1_at

Description tigr:9630.m05263
TID=OsAffx.24845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5325011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24845.1.S1_at--36--4351Chr02:32589797..32589821 (25 bp)
GCCAGGACCAAGGACGGAACGCGCC
LOC_Os02g53250
OsAffx.24845.1.S1_at--1147--631Chr02:32589757..32589781 (25 bp)
ATGCAGCGGGTCTACGCGTTCCAGT
LOC_Os02g53250
OsAffx.24845.1.S1_at--959--4631Chr02:32589742..32589766 (25 bp)
GCGTTCCAGTTCATGCTGCTTGGAG
LOC_Os02g53250
OsAffx.24845.1.S1_at--883--1211Chr02:32589735..32589759 (25 bp)
AGTTCATGCTGCTTGGAGCGACGGC
LOC_Os02g53250
OsAffx.24845.1.S1_at--856--611Chr02:32589730..32589754 (25 bp)
ATGCTGCTTGGAGCGACGGCCATCA
LOC_Os02g53250
OsAffx.24845.1.S1_at--93--5891Chr02:32589720..32589744 (25 bp)
GAGCGACGGCCATCATTGGCGTGTA
LOC_Os02g53250
OsAffx.24845.1.S1_at--472--431Chr02:32589709..32589733 (25 bp)
ATCATTGGCGTGTACGCCGAGCCGG
LOC_Os02g53250
OsAffx.24845.1.S1_at--350--9951Chr02:32589697..32589721 (25 bp)
TACGCCGAGCCGGTGTCGTCATTGC
LOC_Os02g53250
OsAffx.24845.1.S1_at--557--3871Chr02:32589667..32589691 (25 bp)
CTGTTCCTGGCGCTTGTGATTTGGC
LOC_Os02g53250
OsAffx.24845.1.S1_at--272--4131Chr02:32589657..32589681 (25 bp)
CGCTTGTGATTTGGCTCGTCGGGTA
LOC_Os02g53250
OsAffx.24845.1.S1_at--1043--8751Chr02:32589651..32589675 (25 bp)
TGATTTGGCTCGTCGGGTACCTGGC
LOC_Os02g53250
Target Sequence 
GCCAGGACCAAGGACGGAACGCGCCCGCCGCAGGCCGCCGATGCAGCGGGTCTACGCGTTCCAGTTCATGCTGCTTGGAG
CGACGGCCATCATTGGCGTGTACGCCGAGCCGGTGTCGTCATTGCCGCGCCTGTTCCTGGCGCTTGTGATTTGGCTCGTC
GGGTACCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis