Browse Element(s) Details


Os.50960.2.S1_x_at

Description gb:AK059743.1
DB_XREF= gi:32969761
TID=Os.50960.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G06, full insert sequence.
FL= gb:AK059743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5338410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50960.2.S1_x_at--1147--3651Chr02:32673358..32673477 (25 bp)
CTTTCAAGTTTCGTAGTTCAGGTCA
LOC_Os02g53384
Os.50960.2.S1_x_at--663--391Chr02:32673534..32673554 (21 bp)
ATCACCATCTCCTACATCATGAGGA
LOC_Os02g53384
Os.50960.2.S1_x_at--918--7651Chr02:32673672..32673696 (25 bp)
GGGATCGTGATCTAGGTGTTTGCAA
LOC_Os02g53384
Os.50960.2.S1_x_at--942--6171Chr02:32673809..32673833 (25 bp)
GAGGAGCTCTTACAGACAATGCACA
LOC_Os02g53384
Os.50960.2.S1_x_at--50--10331Chr02:32674235..32674259 (25 bp)
TTTACCCATCATCATTCTCTGCGGT
LOC_Os02g53384
Os.50960.2.S1_x_at--7--10591NONE
TTCTCTGCGGTGAGGACTACTAGGG
NONE
Os.50960.2.S1_x_at--34--6511Chr02:32675044..32675068 (25 bp)
GATATACTTCCCGTCAGTGCAGGAG
LOC_Os02g53384
Os.50960.2.S1_x_at--1005--10052Chr05:8021646..8021667 (22 bp)
TAGTAAGTCTCTCTGACGTGTTCCG
NONE
Os.50960.2.S1_x_at--120--6711Chr02:32675212..32675236 (25 bp)
GTTCCGGCTGTTATGCTTAATTCCA
LOC_Os02g53384
Os.50960.2.S1_x_at--956--4891Chr02:32675226..32675250 (25 bp)
GCTTAATTCCATGTCCAGTTTGTAG
LOC_Os02g53384
Os.50960.2.S1_x_at--189--1171Chr02:32675242..32675266 (25 bp)
AGTTTGTAGTTCTGTTGGACCTTCA
LOC_Os02g53384
Target Sequence 
CTTTCAAGTTTCGTAGTTCAGGTCAACATTCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGC
CATCACCATCTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGTTTGCAAAGAGC
ATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACAGACAATATAGTATTTCAAGCATCAGGATTTT
TTTTCTTCCCTTTACCCATCATCATTCTCTGCGGTGAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAACACC
AAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGCATGTCATTGCTGGAGTGTAC
CAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATAAAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATT
AGTAAGTCTCTCTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50960.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis