Browse Element(s) Details


Os.56994.1.S1_at

Description gb:AK110707.1
DB_XREF= gi:32995916
TID=Os.56994.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C08, full insert sequence.
FL= gb:AK110707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5343010/11DNA-3-methyladenine glycosylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0003677molecular_functionDNA binding
GO:0003905molecular_functionalkylbase DNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56994.1.S1_at--1000--731Chr02:32690995..32691019 (25 bp)
ATGTTTACCTGTGCTATGGACTGCA
LOC_Os02g53430
Os.56994.1.S1_at--1052--3511Chr02:32690970..32690994 (25 bp)
CATGATGCTCAATGTCGTCGCTGAC
LOC_Os02g53430
Os.56994.1.S1_at--909--8071Chr02:32690933..32690957 (25 bp)
GGAGCTGCTGTTCTGATTCGGTCAT
LOC_Os02g53430
Os.56994.1.S1_at--987--771NONE
ATGTGCTCCCGTTAGTGGGCTGGCA
NONE
Os.56994.1.S1_at--648--8511Chr02:32690229..32690253 (25 bp)
TGGCAACTATTCAGCAGCGTCGAGG
LOC_Os02g53430
Os.56994.1.S1_at--1115--8831Chr02:32690195..32690219 (25 bp)
TGATAAGCCACTTCTACTCACTGGA
LOC_Os02g53430
Os.56994.1.S1_at--24--931Chr02:32689875..32689899 (25 bp)
AGGCATCGAATACGCATCGCCGGAG
LOC_Os02g53430
Os.56994.1.S1_at--419--731Chr02:32689849..32689873 (25 bp)
ATGTTGCTGCACCATGGAGGTTCGC
LOC_Os02g53430
Os.56994.1.S1_at--1020--9991Chr02:32689671..32689695 (25 bp)
TAGCTGCTGCTTGTCCACATTATAG
LOC_Os02g53430
Os.56994.1.S1_at--341--10071Chr02:32689649..32689673 (25 bp)
TAGTGCGCCATGTTTGATGTTCAGA
LOC_Os02g53430
Os.56994.1.S1_at--497--2011Chr02:32689623..32689647 (25 bp)
ACTCTTAGTTTCATCGACACGGCAG
LOC_Os02g53430
Target Sequence 
ATGTTTACCTGTGCTATGGACTGCACATGATGCTCAATGTCGTCGCTGACAAGGAGGGAGTTGGAGCTGCTGTTCTGATT
CGGTCATGTGCTCCCGTTAGTGGGCTGGCAACTATTCAGCAGCGTCGAGGCCAGCAGACTGATAAGCCACTTCTACTCAC
TGGACCAGGAAAGGTTGGTCAAGCTCTGGGGCTTTCCACTGACTGGTCCAACCATCCTCTGTACACACCTGGTGGGTTGG
AGGTACTAGACGGGCCAGAACCGGAGAACATTTTGGTTGGCCCCCGTGTAGGCATCGAATACGCATCGCCGGAGCATGTT
GCTGCACCATGGAGGTTCGCCGTCGCAGGGACGCCATGGATTAGTGCCCCCAAGAACACTCTCAGACCAAGGTGAGGGCT
TGGAGGCTGGACTGCTGGAGGCCTTGGAGGCTGGAGCTTAGTACCAAAGTAAATGGATGTTTGATGTTTTTGTCTTTTGC
TAGAGGTGAAGGGTAGCTGCTGCTTGTCCACATTATAGTGCGCCATGTTTGATGTTCAGAAACTCTTAGTTTCATCGACA
CGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis