Browse Element(s) Details


Os.18637.1.S1_at

Description gb:AK110750.1
DB_XREF= gi:32995959
TID=Os.18637.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-G06, full insert sequence.
FL= gb:AK110750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5349011/11Metal tolerance protein C3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein
LOC_Os02g53520Os.26359.1.S1_a_at6/112+32725320..32734354kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18637.1.S1_at--1064--7111Chr02:32716815..32716839 (25 bp)
GTCAGTGTGCCCCTTCAGATATGCT
LOC_Os02g53490
Os.18637.1.S1_at--30--5551Chr02:32716843..32716867 (25 bp)
GAAACTGACATACCTCGCCATGAAG
LOC_Os02g53490
Os.18637.1.S1_at--723--10751Chr02:32716890..32716914 (25 bp)
TTGACACGGTTCGAGCTTACAGCTT
LOC_Os02g53490
Os.18637.1.S1_at--866--5891Chr02:32716917..32716938 (22 bp)
GAGCTCTCTACTTTGTCGAGGTTGA
LOC_Os02g53490
Os.18637.1.S1_at--931--6151Chr02:32717072..32717095 (24 bp)
GAGGTTGACATCGAGCTATCTGAGG
LOC_Os02g53490
Os.18637.1.S1_at--558--3331Chr02:32717116..32717140 (25 bp)
CACTCCATTGGTGAATCGCTGCAGG
LOC_Os02g53490
Os.18637.1.S1_at--911--1251Chr02:32717230..32717254 (25 bp)
AGATTGCCCTCTACTGAGCCTTGAG
LOC_Os02g53490
Os.18637.1.S1_at--357--6931Chr02:32717307..32717331 (25 bp)
GTAGTACAGTCTTCCACTGGTTTGG
LOC_Os02g53490
Os.18637.1.S1_at--537--1931Chr02:32717322..32717346 (25 bp)
ACTGGTTTGGTTTGTCGCTGAGGCA
LOC_Os02g53490
Os.18637.1.S1_at--770--5291Chr02:32717350..32717374 (25 bp)
GAAGGCTTATGGTTACACGTACACG
LOC_Os02g53490
Os.18637.1.S1_at--815--1951Chr02:32717436..32717460 (25 bp)
ACTGGATTCGCCATTTGGTGCGTTT
LOC_Os02g53490
Target Sequence 
GTCAGTGTGCCCCTTCAGATATGCTNCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGAC
ACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGA
GGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCNTGCTTTTGTTCATGTGGATT
TTGAGAGCACTCATAAGCCGGAGCACNAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAG
TTTTACNCTTGTGCAGTGTACTGAAATTCNGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAG
AAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAA
ATAATACTGGATTCGCCATTTGGTGCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis