Browse Element(s) Details


Os.50813.1.S1_at

Description gb:AK058729.1
DB_XREF= gi:32968747
TID=Os.50813.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F08, full insert sequence.
FL= gb:AK058729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g265709/11CAAX amino terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26554Os.53944.1.A1_at11/119+16073906..16077408expressed protein
LOC_Os09g26554Os.53944.1.A1_s_at11/119+16073906..16077408expressed protein
LOC_Os09g26560Os.6268.1.S1_at10/119+16077812..16083119expressed protein
LOC_Os09g26570Os.50813.1.S1_at9/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26570OsAffx.30042.1.S1_x_at8/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26580NANA9+16096520..16099873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50813.1.S1_at--315--171Chr09:16095097..16095121 (25 bp)
ATTTTGGATGATCAGCACGTACCAT
LOC_Os09g26570
Os.50813.1.S1_at--847--1871Chr09:16095113..16095137 (25 bp)
ACGTACCATCTTCATCCTTTTGATG
LOC_Os09g26570
Os.50813.1.S1_at--102--31NONE
ATTGGCTTAAGTGTTTGCGCATTAC
NONE
Os.50813.1.S1_at--417--9151NONE
TGCGCATTACTTGCTATCCTTTTCT
NONE
Os.50813.1.S1_at--280--1191Chr09:16095234..16095258 (25 bp)
AGTACCCTCAACGTATAGCTTCAGA
LOC_Os09g26570
Os.50813.1.S1_at--729--5131Chr09:16095295..16095319 (25 bp)
GCAAAGGACTGCTCTAGTATACCAT
LOC_Os09g26570
Os.50813.1.S1_at--934--10031Chr09:16095309..16095333 (25 bp)
TAGTATACCATTTTACACCGCGGCT
LOC_Os09g26570
Os.50813.1.S1_at--1061--1791Chr09:16095325..16095349 (25 bp)
ACCGCGGCTCCATGTTCAGAGGGAA
LOC_Os09g26570
Os.50813.1.S1_at--525--6131Chr09:16095343..16095367 (25 bp)
GAGGGAAGCACCCAGTTACCTCAAA
LOC_Os09g26570
Os.50813.1.S1_at--492--4751Chr09:16095386..16095410 (25 bp)
GCTGATGCATCAACTTTGTGCTTGT
LOC_Os09g26570
Os.50813.1.S1_at--542--7591Chr09:16095416..16095440 (25 bp)
GGGCATCTGCAATGTTCATATTCTT
LOC_Os09g26570
Target Sequence 
ATTTTGGATGATCAGCACGTACCATCTTCATCCTTTTGATGGTGTAATTGGCTTAAGTGTTTGCGCATTACTTGCTATCC
TTTTCTTCCCCCAAGAACCTGTTCAGAAGGATTCTTTTGTATCGTGACAAGAAAACAAGTACCCTCAACGTATAGCTTCA
GAAAAAGATGCGATCATCTCTGTACAAAATTTGTGTGAGCAAAGGACTGCTCTAGTATACCATTTTACACCGCGGCTCCA
TGTTCAGAGGGAAGCACCCAGTTACCTCAAAAAGAATCTCAGAGATTATGCTGATGCATCAACTTTGTGCTTGTCCTTGG
GGCATCTGCAATGTTCATATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis