Browse Element(s) Details


Os.53944.1.A1_s_at

Description gb:AK100962.1
DB_XREF= gi:32986171
TID=Os.53944.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141M07, full insert sequence.
FL= gb:AK100962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2655411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed
LOC_Os09g26554Os.53944.1.A1_at11/119+16073906..16077408expressed protein
LOC_Os09g26554Os.53944.1.A1_s_at11/119+16073906..16077408expressed protein
LOC_Os09g26560Os.6268.1.S1_at10/119+16077812..16083119expressed protein
LOC_Os09g26570Os.50813.1.S1_at9/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26570OsAffx.30042.1.S1_x_at8/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26580NANA9+16096520..16099873hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53944.1.A1_s_at--875--10791Chr09:16076855..16076879 (25 bp)
TTGTTCGTCACGTGAATGCTGTCTT
LOC_Os09g26554
Os.53944.1.A1_s_at--158--9131Chr09:16076871..16076895 (25 bp)
TGCTGTCTTGCTCAATTCAGAAAAG
LOC_Os09g26554
Os.53944.1.A1_s_at--152--3951Chr09:16076916..16076940 (25 bp)
CGGAAGCAGCTGGTGTTGATTTAGA
LOC_Os09g26554
Os.53944.1.A1_s_at--284--10771Chr09:16077100..16077124 (25 bp)
TTGATGACGAGCTCAGACCTTCAAG
LOC_Os09g26554
Os.53944.1.A1_s_at--722--5291Chr09:16077134..16077158 (25 bp)
GAAGGCCATCACGATCTGAGTGTCT
LOC_Os09g26554
Os.53944.1.A1_s_at--424--4051Chr09:16077145..16077169 (25 bp)
CGATCTGAGTGTCTCTTTTTTGTTA
LOC_Os09g26554
Os.53944.1.A1_s_at--319--6491Chr09:16077192..16077216 (25 bp)
GATAGCCCAACCTGTGTTGATGATA
LOC_Os09g26554
Os.53944.1.A1_s_at--1090--7051Chr09:16077239..16077263 (25 bp)
GTAAGCTGACCTGTGACTCATTTTG
LOC_Os09g26554
Os.53944.1.A1_s_at--755--2871Chr09:16077294..16077318 (25 bp)
AAGTGGCTGTTAGACAGGCTGGCCT
LOC_Os09g26554
Os.53944.1.A1_s_at--917--1951Chr09:16077322..16077346 (25 bp)
ACTGAACTCGGCCTATTTTGAGCTT
LOC_Os09g26554
Os.53944.1.A1_s_at--859--9571Chr09:16077367..16077391 (25 bp)
TCATTATTCACTGCCCAACTTTGGT
LOC_Os09g26554
Target Sequence 
TTGTTCGTCACGTGAATGCTGTCTTGCTCAATTCAGAAAAGGAATGGGCCTAAGAATGTAGCGGAAGCAGCTGGTGTTGA
TTTAGAAGGCAGAAGATGATGAGGGGCCTTTGATCATTGTTNTGCAGCTTTTNTCATTTTTAGCTGCTATGCGCATNTGC
ATTGATGACGAGCTCAGACCTTCAAGNGCAATGGTGAAGGCCATCACGATCTGAGTGTCTCTTTTTTGTTATTATTATTC
TCTATGAAAATTTGATAGCCCAACCTGTGTTGATGATACAATGTGGGTGGTTTTTNTTTTGTAAGCTGACCTGTGACTCA
TTTTGGGGCNCGGTGGTGTCAGACTGATGAAATGTAAGTGGCTGTTAGACAGGCTGGCCTNACACTGAACTCGGCCTATT
TTGAGCTTNCTGTACTGTCTAACTTTTNTCATTATTCACTGCCCAACTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53944.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis