Browse Element(s) Details


Os.6268.1.S1_at

Description gb:AK070597.1
DB_XREF= gi:32980621
TID=Os.6268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058C13, full insert sequence.
FL= gb:AK070597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2656010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed
LOC_Os09g26554Os.53944.1.A1_at11/119+16073906..16077408expressed protein
LOC_Os09g26554Os.53944.1.A1_s_at11/119+16073906..16077408expressed protein
LOC_Os09g26560Os.6268.1.S1_at10/119+16077812..16083119expressed protein
LOC_Os09g26570Os.50813.1.S1_at9/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26570OsAffx.30042.1.S1_x_at8/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26580NANA9+16096520..16099873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6268.1.S1_at--608--7851Chr09:16079001..16079025 (25 bp)
GGTATGGCTTTTTCCAATGCTGCAG
LOC_Os09g26560
Os.6268.1.S1_at--115--1351NONE
AGAGTTCGGTGGCATACTGCTCGAT
NONE
Os.6268.1.S1_at--941--9911Chr09:16078510..16078534 (25 bp)
TACTGCTCGATAGGTGTGTCACACA
LOC_Os09g26560
Os.6268.1.S1_at--371--5731Chr09:16078457..16078481 (25 bp)
GACTGCAACCAGATGATAAGCCTCA
LOC_Os09g26560
Os.6268.1.S1_at--326--6471Chr09:16078359..16078467 (25 bp)
GATAAGCCTCAAGTTTTCTGTGAAA
LOC_Os09g26560
Os.6268.1.S1_at--413--2051Chr09:16078149..16078173 (25 bp)
ACTTCCCAGGCCGATTATTGTTCGG
LOC_Os09g26560
Os.6268.1.S1_at--200--8231Chr09:16078126..16078150 (25 bp)
GGCAATATGCTCGTGGAGTTCTATT
LOC_Os09g26560
Os.6268.1.S1_at--789--6051Chr09:16078111..16078135 (25 bp)
GAGTTCTATTCTCCGAAGATTGGTA
LOC_Os09g26560
Os.6268.1.S1_at--924--5651Chr09:16077909..16077933 (25 bp)
GACATCCTCATGGTAGGCACAAAAT
LOC_Os09g26560
Os.6268.1.S1_at--362--3351Chr09:16077880..16077904 (25 bp)
CACCTGACTTGGGAAAGGCGTTCAA
LOC_Os09g26560
Os.6268.1.S1_at--713--7051Chr09:16077830..16077854 (25 bp)
GTAACCGTTAATCCGTGATGGCGAT
LOC_Os09g26560
Target Sequence 
GGTATGGCTTTTTCCAATGCTGCAGAGTTCGGTGGCATACTGCTCGATAGGTGTGTCACACAGATGCTAGAAAAACAGAA
CTTGTCAGAGGACTGCAACCAGATGATAAGCCTCAAGTTTTCTGTGAAAACAAGAGGTGGCATATCTGAAGCCACAACAA
GAACAATCAACACTGACAAGTTTACTCCAAGTGGACTCAACAGGTGGCCACTTCCCAGGCCGATTATTGTTCGGCAATAT
GCTCGTGGAGTTCTATTCTCCGAAGATTGGTACAGTTAGCAGGACTAGGGTTTGTTTTATCCTTATACGTAGAAGTTTCT
CATCATGAAAAGTATTTATGTGTAAGGTGGAATTACACGGATAGTGTGAAATGTTAATAAGGGTTTCACCAGAATTCAAG
TTGAGTAGTGAAGCTGTATCGGTGGAATTTTTTTGTATGGTATTACCATGACATCCTCATGGTAGGCACAAAATATAGCA
CCTGACTTGGGAAAGGCGTTCAATTGTCGAGTTAAAAACATAGCTGTTGTAACCGTTAATCCGTGATGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis