Browse Element(s) Details


Os.5374.1.S1_s_at

Description gb:AK102877.1
DB_XREF= gi:32988086
TID=Os.5374.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112E21, full insert sequence.
FL= gb:AK102877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2655011/11PDZ domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed
LOC_Os09g26554Os.53944.1.A1_at11/119+16073906..16077408expressed protein
LOC_Os09g26554Os.53944.1.A1_s_at11/119+16073906..16077408expressed protein
LOC_Os09g26560Os.6268.1.S1_at10/119+16077812..16083119expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5374.1.S1_s_at--762--3411Chr09:16057300..16057324 (25 bp)
CAGAAGATATTTTGCGACGTGATGA
LOC_Os09g26550
Os.5374.1.S1_s_at--433--10391Chr09:16057309..16057333 (25 bp)
TTTTGCGACGTGATGAAGAGATGCT
LOC_Os09g26550
Os.5374.1.S1_s_at--99--1351Chr09:16057325..16057443 (25 bp)
AGAGATGCTTTTCAAGGTGTCTATT
LOC_Os09g26550
Os.5374.1.S1_s_at--864--2931Chr09:16057605..16057629 (25 bp)
AAGGCGGAGTGGCTATATCCATGTA
LOC_Os09g26550
Os.5374.1.S1_s_at--919--3951Chr09:16057609..16057633 (25 bp)
CGGAGTGGCTATATCCATGTACGGA
LOC_Os09g26550
Os.5374.1.S1_s_at--599--4471Chr09:16057658..16057682 (25 bp)
GCCTGATCCGATAGTTATTCGAACC
LOC_Os09g26550
Os.5374.1.S1_s_at--369--10211Chr09:16057673..16057697 (25 bp)
TATTCGAACCTGTGAAGATAGCTAT
LOC_Os09g26550
Os.5374.1.S1_s_at--169--1271Chr09:16057688..16057963 (25 bp)
AGATAGCTATTATTTACCCGCCCTT
LOC_Os09g26550
Os.5374.1.S1_s_at--847--10331Chr09:16057956..16057975 (20 bp)
TTTACCCGCCCTTGATGAGTCTGAA
LOC_Os09g26550
Os.5374.1.S1_s_at--664--4191Chr09:16057956..16057979 (24 bp)
CCCGCCCTTGATGAGTCTGAACTAA
LOC_Os09g26550
Os.5374.1.S1_s_at--443--5471Chr09:16057973..16057997 (25 bp)
GAACTAAGACTATATTACGGTGAAG
LOC_Os09g26550
Target Sequence 
CAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTNTAAGGCCAAGTAACGGTTNAACCTTCCGT
GCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATG
TACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCG
CCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5374.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis