Browse Element(s) Details


OsAffx.30041.1.S1_at

Description tigr:9637.m02315
TID=OsAffx.30041.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2653011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30041.1.S1_at--307--3491Chr09:16030622..16030646 (25 bp)
CAGGCCATACCTTGCATTCCTACAT
LOC_Os09g26530
OsAffx.30041.1.S1_at--365--91Chr09:16030607..16030631 (25 bp)
ATTCCTACATCGTTTCATGAAGGCG
LOC_Os09g26530
OsAffx.30041.1.S1_at--243--9011Chr09:16030590..16030614 (25 bp)
TGAAGGCGACTTACCAGAGGCAGAT
LOC_Os09g26530
OsAffx.30041.1.S1_at--206--9651Chr09:16029690..16029713 (24 bp)
TCAGTTATTTAATGCATGCCAGTGT
LOC_Os09g26530
OsAffx.30041.1.S1_at--914--1491Chr09:16029625..16029649 (25 bp)
AGCACATTTGTGCATACCTGTCCGA
LOC_Os09g26530
OsAffx.30041.1.S1_at--336--7631Chr09:16029584..16029608 (25 bp)
GGGAGCACCTATATGTAGTCGATTC
LOC_Os09g26530
OsAffx.30041.1.S1_at--952--6671Chr09:16029538..16029562 (25 bp)
GTTGCTCGGACAGCACTGTGTTTAT
LOC_Os09g26530
OsAffx.30041.1.S1_at--418--10131Chr09:16029336..16029356 (21 bp)
TATGAGATGTCAGCTCTTATTGAGA
LOC_Os09g26530
OsAffx.30041.1.S1_at--663--6771Chr09:16029261..16029285 (25 bp)
GTTAGCAGTTCGCAAATGTCAAGGT
LOC_Os09g26530
OsAffx.30041.1.S1_at--620--9191Chr09:16029181..16029205 (25 bp)
TGCCAGTTCGCAAATGTCAAGTTTA
LOC_Os09g26530
OsAffx.30041.1.S1_at--930--2291Chr09:16029170..16029194 (25 bp)
AAATGTCAAGTTTACCAGCGAAGAG
LOC_Os09g26530
Target Sequence 
CAGGCCATACCTTGCATTCCTACATCGTTTCATGAAGGCGACTTACCAGAGGCAGATGTTGTTTTTTGTATTGGATGTTT
TAGCATTGTGAAAGAGCAGATAATGACTGCGGGAATAATCAGTTATTTAATGCATGCCAGTGTATGCGAATTTGAAAAGG
AACTGAGAGGAGAACAACAGGTTAGCACATTTGTGCATACCTGTCCGATTGGGGATGGGTTGATGGGAGCACCTATATGT
AGTCGATTCGGAAAAGTTTTTGGAATGAATGTTGCTCGGACAGCACTGTGTTTATCAATTAATTTTGCCCTGAACAATAG
TCAATTAAAGGTTGAATTGGCAAAACTATTACAGAATGAAGATTATGAGATGTCAGCTCTTATTGAGAAGTACGATTCTG
AAAAAACGAGTGCATCGAAGAAGAGAAAGGGAAGGGGTGTTAGCAGTTCGCAAATGTCAAGGTCACCAGTGAAGAGAAAG
GCGGGTGGCAGTTCTTCGTCAAGAAGGGAGAGGGGTGTTGCCAGTTCGCAAATGTCAAGTTTACCAGCGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis