Browse Element(s) Details


OsAffx.6406.1.S1_at

Description tigr:9637.m02311
TID=OsAffx.6406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2649011/11esterase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6406.1.S1_at--61--3511Chr09:16009070..16009094 (25 bp)
CATGCCGGCGGGTTACGACGACGCG
LOC_Os09g26490
OsAffx.6406.1.S1_at--622--5811Chr09:16009134..16009158 (25 bp)
GACCCTTGGGTGTCCAACTACGCCG
LOC_Os09g26490
OsAffx.6406.1.S1_at--709--2531Chr09:16009149..16009173 (25 bp)
AACTACGCCGACACCGCGTGCGTGT
LOC_Os09g26490
OsAffx.6406.1.S1_at--1104--7331Chr09:16009751..16009775 (25 bp)
GTGCACGTTGCATGGCGCGGGCGCG
LOC_Os09g26490
OsAffx.6406.1.S1_at--705--3951Chr09:16009768..16009792 (25 bp)
CGGGCGCGGAGAAAACGACGTCAAT
LOC_Os09g26490
OsAffx.6406.1.S1_at--711--2591Chr09:16009781..16009805 (25 bp)
AACGACGTCAATGCATGCGTTGCGA
LOC_Os09g26490
OsAffx.6406.1.S1_at--538--3011Chr09:16009790..16009814 (25 bp)
AATGCATGCGTTGCGAGGCCAAACT
LOC_Os09g26490
OsAffx.6406.1.S1_at--299--4611Chr09:16009802..16009826 (25 bp)
GCGAGGCCAAACTGCGCCGAAAGTT
LOC_Os09g26490
OsAffx.6406.1.S1_at--965--1971Chr09:16009812..16009836 (25 bp)
ACTGCGCCGAAAGTTCAACATGCCG
LOC_Os09g26490
OsAffx.6406.1.S1_at--704--5571Chr09:16009820..16009844 (25 bp)
GAAAGTTCAACATGCCGGATCAGGA
LOC_Os09g26490
OsAffx.6406.1.S1_at--984--4251Chr09:16009834..16009858 (25 bp)
CCGGATCAGGAATAATGGCCAATAA
LOC_Os09g26490
Target Sequence 
CATGCCGGCGGGTTACGACGACGCGTGGGCGGCGCTCCGGTGGGCGGCGTCTTCCCGCCACTCCGACCCTTGGGTGTCCA
ACTACGCCGACACCGCGTGCGTGTTCCTCGCCGGCGAGAGCGCCGGCGCCAACATCGTGCACAACGCGGTGGCGTCGCTG
CCGTGCCGCCGGGCGCTGGTGTCCGTGGCCACGGAGGACGTCCTGCGCGGCCGCGGGCGGCGGTACGCGGCGGCGCTGAT
GCGCGGCGGCGCGTGGGGCGGCGAGGCGACGCTGGTGGAGTCCGGCGGCGAGGACCACTGCTTCCACCTCTCGCCAAGGC
CTAACCCCAACGCCGCGGCGCTCATGGACCACGTCGCCGAGTTCATCGCCAAGGGCAACACCTCCACGTCGTCGCCGATG
GCGAAGCGGCGGCGTCGCCGTCGCCGGTGCACGTTGCATGGCGCGGGCGCGGAGAAAACGACGTCAATGCATGCGTTGCG
AGGCCAAACTGCGCCGAAAGTTCAACATGCCGGATCAGGAATAATGGCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis