Browse Element(s) Details


Os.45817.1.S1_at

Description gb:NM_183580.1
DB_XREF= gi:34894287
TID=Os.45817.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2646010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45817.1.S1_at--1025--4091Chr09:15985717..15985741 (25 bp)
CGACATATGGCATCGGTGTGTTTGA
LOC_Os09g26460
Os.45817.1.S1_at--120--857Chr03:8447980..8448452 (25 bp)
ATGGCATCGGTGTGTTTGAAAACAA
NONE
Os.45817.1.S1_at--270--86529Chr10:20095372..20095395 (24 bp)
TGGGAAATTCATCCGAGCATATAAT
NONE
Os.45817.1.S1_at--926--4956Chr11:26530149..26530173 (25 bp)
GCATATAATAAGTGCGACCACACGG
NONE
Os.45817.1.S1_at--998--84749Chr11:16211191..16211211 (21 bp)
TGGCTGAGTAATTAGCTAATCGGAG
NONE
Os.45817.1.S1_at--764--3733Chr02:20472678..20472701 (24 bp)
CTAATCGGAGGAGCCATGATGCCAT
NONE
Os.45817.1.S1_at--969--5831Chr09:15985523..15985547 (25 bp)
GAGCCATGATGCCATGAGACATGTG
LOC_Os09g26460
Os.45817.1.S1_at--15--131Chr09:15985497..15985521 (25 bp)
ATTCAACGGGCTGGTGTCAGGTAGA
LOC_Os09g26460
Os.45817.1.S1_at--266--3971Chr09:15985491..15985515 (25 bp)
CGGGCTGGTGTCAGGTAGAACCCTC
LOC_Os09g26460
Os.45817.1.S1_at--442--3891Chr09:15985487..15985511 (25 bp)
CTGGTGTCAGGTAGAACCCTCGGGC
LOC_Os09g26460
Os.45817.1.S1_at--1105--2731Chr01:10423184..10423208 (25 bp)
AAGAAGATGAGGCAGATCCTGCTGA
NONE
Target Sequence 
CGACATATGGCATCGGTGTGTTTGAAAACAAAATAGATTGTGAAAACTCGCGATGCGGGGGTTGTGCCTATGTGGTACTG
TCCTGTATTCGCATATAAGGACCGATTCCTGTGGGAAATTCATCCGAGCATATAATAAGTGCGACCACACGGGTGCAATG
GGACGCCCCTGGCTGAGTAATTAGCTAATCGGAGGAGCCATGATGCCATGAGACATGTGGATTCAACGGGCTGGTGTCAG
GTAGAACCCTCGGGCTTCCTGGCACAATATGGTCTGGGACCTAACCTGTTGTCGGTCTGGGACCCCTCTCGTTGGCATAT
GGCAACCCTGTGTCGGCTTTCGAAATGCCTTGTCATGANNNNNTTNNNNNNNNNNNNNANNNNNNNNCTCNNNNNCTGGG
TGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTACCCCCTCTGCAGAGGTTAACNAANCTGTTCGAACAGCCGTNCCC
ACGGTCATGGGCGGATTTGCTGAAGAAGATGAGGCAGATCCTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis