Browse Element(s) Details


Os.7529.1.S2_at

Description gb:AK069042.1
DB_XREF= gi:32979066
TID=Os.7529.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003L21, full insert sequence.
FL= gb:AK069042.1 gb:AK071264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2643011/11retrotransposon protein, putative, unclassified
LOC_Os12g1808010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7529.1.S2_at--221--2932Chr12:10388897..10388921 (25 bp)
AAGGAAGTCACCCTGCTGTGTACAG
LOC_Os12g18080
Os.7529.1.S2_at--30--1772Chr12:10388925..10388949 (25 bp)
ACCTGAGCCGATTTTGTTGTCTAAA
LOC_Os12g18080
Os.7529.1.S2_at--888--3732Chr12:10388945..10388969 (25 bp)
CTAAAAATTTTGCTCGCCAACCTGC
LOC_Os12g18080
Os.7529.1.S2_at--408--1732Chr12:10388990..10389014 (25 bp)
ACCATCCTCAAGGTTCTGTGTTGGA
LOC_Os12g18080
Os.7529.1.S2_at--702--3151Chr09:15977897..15977921 (25 bp)
AATTCTCACAGTCTCGCTCTGATAA
LOC_Os09g26430
Os.7529.1.S2_at--703--9832Chr12:10389087..10389111 (25 bp)
TAAAGGCCTTTGTTTCACGTGTGGT
LOC_Os12g18080
Os.7529.1.S2_at--530--8312Chr12:10389139..10389163 (25 bp)
GGCTCCTCGGTTCAGTTACATGTTG
LOC_Os12g18080
Os.7529.1.S2_at--1090--2632Chr12:10389202..10389226 (25 bp)
AACCATGAGTCCGTCGATACTGTAT
LOC_Os12g18080
Os.7529.1.S2_at--254--8312Chr12:10389252..10389276 (25 bp)
GGCTATTTCTTATCAGGCTGTTACT
LOC_Os12g18080
Os.7529.1.S2_at--731--8992Chr12:10389282..10389306 (25 bp)
TGAATCCTTGACTTCTTTTCGGTTA
LOC_Os12g18080
Os.7529.1.S2_at--132--10072Chr12:10389341..10389365 (25 bp)
TAGTCGATTCTGGTAGTTCTCATTC
LOC_Os12g18080
Target Sequence 
AAGGAAGTCACCCTGCTGTGTACAGGAAACCTGAGCCGATTTTGTTGTCTAAAAATTTTGCTCGCCAACCTGCACCTGTT
TCTCCTGTGTCCAACCATCCTCAAGGTTCTGTGTTGGAGGATAGGAAACAGTCTGAATTCTCACAGTCTCGCTCTGATAA
GTTTTCTGCCTTGAAATCCTACAAGCGTGCTAAAGGCCTTTGTTTCACGTGTGGTGAGCATTGGAGCAGAGAGCATAAGT
GTGGCTCCTCGGTTCAGTTACATGTTGTTCAGGAACTTTTAGCTGCGTTGCAGGACGATCAGTTAAACCATGAGTCCGTC
GATACTGTATCTGAACCTGTAGAACCAGTTTTTATGGCTATTTCTTATCAGGCTGTTACTGGTACTGAATCCTTGACTTC
TTTTCGGTTAAATGGCTGGGTACAGGGGTATGAATTACTCATGTTAGTCGATTCTGGTAGTTCTCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7529.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis