Browse Element(s) Details


Os.45982.1.A1_x_at

Description gb:CB651281
DB_XREF= gi:29646274
DB_XREF=OSJNEb16C23.r
CLONE=OSJNEb16C23
TID=Os.45982.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432C03.11 (P0432C03.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2646010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45982.1.A1_x_at--870--10191Chr09:15984690..15984714 (25 bp)
TATATAGTTCCTACACCTTGAAATG
LOC_Os09g26460
Os.45982.1.A1_x_at--274--10855Chr11:23531988..23532012 (25 bp)
TTGGTGTTTCCTCGTTCGTGTCGTC
NONE
Os.45982.1.A1_x_at--704--10571Chr09:15984535..15984559 (25 bp)
TTCTCGGGCTGTTCTAAAATGCAAC
LOC_Os09g26460
Os.45982.1.A1_x_at--1020--5131NONE
GCAACCTAAGTTAAGATGTGGCACT
NONE
Os.45982.1.A1_x_at--56--8671Chr09:15983852..15983876 (25 bp)
TGTGGCACTGTGTTTTGCTACGACT
LOC_Os09g26460
Os.45982.1.A1_x_at--784--9111Chr09:15983828..15983852 (25 bp)
TGCGGTTCATCCTTTAATCCGAGAA
LOC_Os09g26460
Os.45982.1.A1_x_at--960--6871Chr09:15983802..15983826 (25 bp)
GTATTCATGCAAGTGTACTCCTCGC
LOC_Os09g26460
Os.45982.1.A1_x_at--161--5371Chr09:15983756..15983780 (25 bp)
GAAGACGGATTCATCGACCTTACTT
LOC_Os09g26460
Os.45982.1.A1_x_at--667--1171Chr09:15983695..15983719 (25 bp)
AGTAATGTTCTGTAGCGAGTCGGCG
LOC_Os09g26460
Os.45982.1.A1_x_at--510--6431Chr09:15983671..15983695 (25 bp)
GATCATTCGATTCAACCTGTTTCCA
LOC_Os09g26460
Os.45982.1.A1_x_at--166--591Chr09:15983631..15983655 (25 bp)
ATGCGGAGTTCTTGTTCTTGACGGA
LOC_Os09g26460
Target Sequence 
TATATAGTTCCTACACCTTGAAATGAAGATGAAGTGAAATGAAGAATAGGGTTTCGTCCTAGTTCCCAGCCGTCGCCTGT
GGTGTTGGGTGTTAGTCCGTTGGTTCCGCTGCTGCTGCTGCTGTTGGTGTTTCCTCGTTCGTGTCGTCGGTTGCATTCTC
GGGCTGTTCTAAAATGCAACCTAAGTTAAGATGTGGCACTGTGTTTTGCTACGACTGCGGTTCATCCTTTAATCCGAGAA
TGTATTCATGCAAGTGTACTCCTCGCAAATCTTCACAATCGGAGGAGGAAGACGGATTCATCGACCTTACTTGCTCAGAC
CGTCCGCTTAATCTGGGGAATCATTGCTAGTAATGTTCTGTAGCGAGTCGGCGATCATTCGATTCAACCTGTTTCCATTA
CTCCATTTGTATATGCGGAGTTCTTGTTCTTGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45982.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis