Browse Element(s) Details


Os.50359.1.S1_at

Description gb:AK120863.1
DB_XREF= gi:37990486
TID=Os.50359.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025A08, full insert sequence.
FL= gb:AK109104.1 gb:AK120863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2646011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50359.1.S1_at--586--5611Chr09:15988954..15988978 (25 bp)
GACAAGATCGATGGGTGCAAGCGCA
LOC_Os09g26460
Os.50359.1.S1_at--731--10531Chr09:15983552..15983576 (25 bp)
TTCATCTGTATATGGCGACTAGTGA
LOC_Os09g26460
Os.50359.1.S1_at--349--4751Chr09:15983512..15983536 (25 bp)
GCTGAGGCGCGTTGATATTGTCTTT
LOC_Os09g26460
Os.50359.1.S1_at--1095--8711Chr09:15983494..15983518 (25 bp)
TGTCTTTTGGGCGAGAGAACCGGTA
LOC_Os09g26460
Os.50359.1.S1_at--730--7991Chr09:15983448..15983472 (25 bp)
GGATGAGCCCAGTAGCCTGTTACTC
LOC_Os09g26460
Os.50359.1.S1_at--857--6771Chr09:15983430..15983454 (25 bp)
GTTACTCTCTGTTAGTACTTCAGCC
LOC_Os09g26460
Os.50359.1.S1_at--372--8791Chr09:15983421..15983445 (25 bp)
TGTTAGTACTTCAGCCCACGATAGG
LOC_Os09g26460
Os.50359.1.S1_at--917--10091Chr09:15983400..15983424 (25 bp)
TAGGCTGAGCTAACGATTTCTTACA
LOC_Os09g26460
Os.50359.1.S1_at--107--191Chr09:15983385..15983409 (25 bp)
ATTTCTTACAGATTGCCCACTTTTG
LOC_Os09g26460
Os.50359.1.S1_at--1016--5591Chr09:15983347..15983371 (25 bp)
GAAATTTTATATATGGCTCCCTGCA
LOC_Os09g26460
Os.50359.1.S1_at--118--271Chr09:15983337..15983361 (25 bp)
ATATGGCTCCCTGCAGGTTAGCGCA
LOC_Os09g26460
Target Sequence 
GACAAGATCGATGGGTGCAAGCGCATGACATGCAGATGTGGCACTGTGTTTTGCTACGACTGCGGTTCATCCTTTAATCC
GAGAATGTATTCATGCAAGTGTACTCCTCGCAAATCTTCACAATCGGAGGAGGAAGACGGATTCATCGACCTTACTTGCT
CAGACCGTCCGCTTAATCTGGGGAATCATTGCTAGTAATGTTCTGTAGCGAGTCGGCGATCATTCGATTCAACCTGTTTC
CATTACTCCATNTGTATATGCGGAGTTCTTGTTCTTGACGGAAACGATAATGATATGTCGCGATTTCTCATCGACCAATA
TTTGGAACATTTTTTTTTCATCTGTATATGGCGACTAGTGAGTATGATTGGACAAAGCTGAGGCGCGTTGATATTGTCTT
TTGGGCGAGAGAACCGGTAGAAACTTGGTTAAGGACAAGGGGATGAGCCCAGTAGCCTGTTACTCTCTGTTAGTACTTCA
GCCCACGATAGGCTGAGCTAACGATTTCTTACAGATTGCCCACTTTTGATAAAAAAAAAACGAAATTTTATATATGGCTC
CCTGCAGGTTAGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis