Browse Element(s) Details


Os.50819.1.S1_at

Description gb:AK058765.1
DB_XREF= gi:32968783
TID=Os.50819.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D08, full insert sequence.
FL= gb:AK058765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g102401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10210OsAffx.16933.1.S1_at10/118+5915434..5916765hypothetical protein
LOC_Os08g10220NANA8+5924367..5926105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.14491.2.S1_x_at7/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.47463.1.S1_x_at4/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50819.1.S1_at--572--8551Chr08:5933357..5933381 (25 bp)
TGGAGTGAGTGAACCTGCCGGCTAC
LOC_Os08g10240
Os.50819.1.S1_at--635--1191NONE
AGTTTCTCCGAGAAAGCCCGGTGAG
NONE
Os.50819.1.S1_at--814--10091Chr08:5932217..5932241 (25 bp)
TATGGTGTATGCTGTGGCCCGAAGA
NONE
Os.50819.1.S1_at--355--2871Chr08:5932193..5932217 (25 bp)
AAGGGCCTCCTATGATGGAAATTGT
NONE
Os.50819.1.S1_at--917--3171Chr08:5932174..5932198 (25 bp)
AATTGTGAGCAAGGCTGGCCCTCGA
NONE
Os.50819.1.S1_at--474--3691Chr08:5932089..5932113 (25 bp)
CTATTTGTAACTCCACTGTCTCATT
NONE
Os.50819.1.S1_at--243--1971Chr08:5932075..5932099 (25 bp)
ACTGTCTCATTTCCGCATCATATAT
NONE
Os.50819.1.S1_at--528--291Chr08:5932017..5932041 (25 bp)
ATAGATAGCGTGTACCCGAGCGGAC
NONE
Os.50819.1.S1_at--459--4231Chr08:5932002..5932026 (25 bp)
CCGAGCGGACTATGCATCATTGGAT
NONE
Os.50819.1.S1_at--1032--3691Chr08:5931972..5931996 (25 bp)
CTATGTTTCTGATGGTCTTGTGGGT
NONE
Os.50819.1.S1_at--811--3591Chr08:5931956..5931980 (25 bp)
CTTGTGGGTTTGAGGCCTTGAGCTT
NONE
Target Sequence 
TGGAGTGAGTGAACCTGCCGGCTACGGGGAGCTCGCCGGACCAGGTAGAAGATGATGAAATTGAAGTGTTGTCAAGTTTC
TCCGAGAAAGCCCGGTGAGGATGGCAAACATGGAGTGAAGAGGGTATGGTGTATGCTGTGGCCCGAAGAAGGGCCTCCTA
TGATGGAAATTGTGAGCAAGGCTGGCCCTCGAATCCTTTTTTTTCCCCTGATGAATATGTAATTTCGATATGCTGTTGGA
ATCGGTTGAAATCTATTTGTAACTCCACTGTCTCATTTCCGCATCATATATGTATCCATTGCTGAAAGAGGTGTAAAGAG
GTAAATAGATAGCGTGTACCCGAGCGGACTATGCATCATTGGATTGTATCTATGTTTCTGATGGTCTTGTGGGTTTGAGG
CCTTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis