Browse Element(s) Details


OsAffx.16933.1.S1_at

Description tigr:9636.m00982
TID=OsAffx.16933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1021010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10160NANA8+5888450..5891377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10170NANA8+5891653..5894029retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10180OsAffx.1412.1.S1_at1/118+5894865..5897787retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.46012.2.S1_x_at7/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.46012.3.S1_x_at6/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.27088.1.A1_x_at4/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.54691.1.S1_x_at1/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10200NANA8+5906736..5907683Zinc knuckle family protein
LOC_Os08g10210OsAffx.16933.1.S1_at10/118+5915434..5916765hypothetical protein
LOC_Os08g10220NANA8+5924367..5926105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.14491.2.S1_x_at7/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.47463.1.S1_x_at4/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16933.1.S1_at--308--8372Chr03:21772678..21772702 (25 bp)
GGCGAAGTCACGTCAACAAGGCTTG
NONE
OsAffx.16933.1.S1_at--287--9712Chr08:5916653..5916677 (25 bp)
TCAACAAGGCTTGTGCCATAGCGAT
LOC_Os08g10210
OsAffx.16933.1.S1_at--76--931Chr08:5916647..5916671 (25 bp)
AGGCTTGTGCCATAGCGATGACTGA
LOC_Os08g10210
OsAffx.16933.1.S1_at--33--7291Chr08:5916641..5916665 (25 bp)
GTGCCATAGCGATGACTGAGTACGT
LOC_Os08g10210
OsAffx.16933.1.S1_at--585--6311Chr08:5916631..5916655 (25 bp)
GATGACTGAGTACGTGCTCGCCTCC
LOC_Os08g10210
OsAffx.16933.1.S1_at--709--6391NONE
GATCGATGAAGAGAGCACCCTCGCT
NONE
OsAffx.16933.1.S1_at--9--6331Chr08:5915532..5915553 (22 bp)
GATGAAGAGAGCACCCTCGCTTTTC
LOC_Os08g10210
OsAffx.16933.1.S1_at--449--1351Chr08:5915527..5915551 (25 bp)
AGAGAGCACCCTCGCTTTTCTTGCA
LOC_Os08g10210
OsAffx.16933.1.S1_at--859--9031Chr08:5915506..5915530 (25 bp)
TGCACCTGTAGCAAGAGCACAAGAA
LOC_Os08g10210
OsAffx.16933.1.S1_at--136--5391Chr08:5915484..5915508 (25 bp)
GAAGCAGCAAGTGTTACCACGCTCT
LOC_Os08g10210
OsAffx.16933.1.S1_at--946--1471Chr08:5915479..5915503 (25 bp)
AGCAAGTGTTACCACGCTCTGCCTT
LOC_Os08g10210
Target Sequence 
GGCGAAGTCACGTCAACAAGGCTTGTGCCATAGCGATGACTGAGTACGTGCTCGCCTCCGTGTTCTACGCAGCCGCCGCC
GATGGATGGATCGATGAAGAGAGCACCCTCGCTTTTCTTGCACCTGTAGCAAGAGCACAAGAAGCAGCAAGTGTTACCAC
GCTCTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis