Browse Element(s) Details


Os.52458.1.S2_at

Description gb:AK106241.1
DB_XREF= gi:32991450
TID=Os.52458.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C11, full insert sequence.
FL= gb:AK106241.1 gb:AK067237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1025011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10210OsAffx.16933.1.S1_at10/118+5915434..5916765hypothetical protein
LOC_Os08g10220NANA8+5924367..5926105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.14491.2.S1_x_at7/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.47463.1.S1_x_at4/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52458.1.S2_at--378--2231Chr08:5943802..5943826 (25 bp)
AAATTGGCCTTACCTGCTACCAGTT
LOC_Os08g10250
Os.52458.1.S2_at--138--9991Chr08:5943819..5943843 (25 bp)
TACCAGTTTGATCCACCCAGTTATT
LOC_Os08g10250
Os.52458.1.S2_at--882--5271Chr08:5943861..5943885 (25 bp)
GAAGGCCTTAGCACCTACTGAATTT
LOC_Os08g10250
Os.52458.1.S2_at--117--691Chr08:5943920..5943944 (25 bp)
ATGAGGGTCTGACAGCTGTTCCTTC
LOC_Os08g10250
Os.52458.1.S2_at--876--10571Chr08:5943942..5943966 (25 bp)
TTCTCAAGTGTTGGATCGCCGTTTT
LOC_Os08g10250
Os.52458.1.S2_at--566--711Chr08:5944019..5944043 (25 bp)
ATGATCCACAGGTCATCACTTGGGA
LOC_Os08g10250
Os.52458.1.S2_at--1152--871Chr08:5944046..5944070 (25 bp)
ATGGCCAGGAATTGCGTCGACGTTT
LOC_Os08g10250
Os.52458.1.S2_at--1006--4051Chr08:5944063..5944087 (25 bp)
CGACGTTTTCCGCATTCTGAAGCTT
LOC_Os08g10250
Os.52458.1.S2_at--703--7612Chr08:5944114..5944138 (25 bp)
GGGAATGTCACGGTGGCGACCTCAC
LOC_Os08g10250
Os.52458.1.S2_at--1012--8191Chr08:5944177..5944201 (25 bp)
GGAAGTCGGTCCAGGTGCACAAGAT
LOC_Os08g10250
Os.52458.1.S2_at--171--4112Chr08:5944205..5944229 (25 bp)
CGAACACGCGATTCCCGGAGAGTGA
LOC_Os08g10250
Target Sequence 
AAATTGGCCTTACCTGCTACCAGTTTGATCCACCCAGTTATTTATGTATCTCAACTTAAGAAGGCCTTAGCACCTACTGA
ATTTGTTCAATCACAGTTGCCAATTTTGCAGTCTAAAGATGAGGGTCTGACAGCTGTTCCTTCTCAAGTGTTGGATCGCC
GTTTTGTGCGGAAAGGATCCAAGNTGGTGGAGCAGTTGCAAGTTCGATGGTCTGGTAATGATCCACAGGTCATCACTTGG
GAAAATGGCCAGGAATTGCGTCGACGTTTTCCGCATTCTGAAGCTTGGGGACAAGCTTCGTCTCAAGGTGGGGGGAATGT
CACGGTGGCGACCTCACCTGACGACAATGCAGGACAAGCAACAGAGGCTCAGTTGGGAAGTCGGTCCAGGTGCACAAGAT
GACCGAACACGCGATTCCCGGAGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52458.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis