Browse Element(s) Details


OsAffx.5776.1.S1_at

Description tigr:9636.m00990
TID=OsAffx.5776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1029010/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300Os.27144.1.S1_at2/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300OsAffx.17967.1.A1_at1/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5776.1.S1_at--409--2411Chr08:5981944..5981968 (25 bp)
AAACACCGACAACTCTCGTGAAGAA
LOC_Os08g10290
OsAffx.5776.1.S1_at--747--2151Chr08:5981946..5981970 (25 bp)
ACACCGACAACTCTCGTGAAGAAGA
LOC_Os08g10290
OsAffx.5776.1.S1_at--89--4011Chr08:5981960..5981984 (25 bp)
CGTGAAGAAGATAAGATCTATCTCT
LOC_Os08g10290
OsAffx.5776.1.S1_at--36--3691Chr08:5981983..5982103 (25 bp)
CTTTGAATGGGCCTGGACACTATAT
LOC_Os08g10290
OsAffx.5776.1.S1_at--768--791NONE
ATGGGCCTGGACACTATATGAGAGC
NONE
OsAffx.5776.1.S1_at--103--4271Chr08:5982090..5982114 (25 bp)
CCTGGACACTATATGAGAGCGGGCA
LOC_Os08g10290
OsAffx.5776.1.S1_at--92--3331Chr08:5982096..5982120 (25 bp)
CACTATATGAGAGCGGGCAAGCACT
LOC_Os08g10290
OsAffx.5776.1.S1_at--178--1351Chr08:5982233..5982257 (25 bp)
AGAGTCATGGCTATCCTAGCCGGAG
LOC_Os08g10290
OsAffx.5776.1.S1_at--59--7131Chr08:5982236..5982260 (25 bp)
GTCATGGCTATCCTAGCCGGAGATA
LOC_Os08g10290
OsAffx.5776.1.S1_at--1024--3491Chr08:5982238..5982262 (25 bp)
CATGGCTATCCTAGCCGGAGATATT
LOC_Os08g10290
OsAffx.5776.1.S1_at--627--3331Chr08:5982298..5982322 (25 bp)
CACTGAATGGCAGCTCAGAGGAGGA
LOC_Os08g10290
Target Sequence 
AAACACCGACAACTCTCGTGAAGAAGATAAGATCTATCTCTTTGAATGGGCCTGGACACTATATGAGAGCGGGCAAGCAC
TCGGGATCGTAGACCCAAAACTCAAGGAATTCAATGAGAAGGAAGCCTTGAGAGTCATCTGTGCCGCACTCCTTTGCACT
CAAGGGTCACCACACCAGCGGCCATCAATGTCCAGAGTCATGGCTATCCTAGCCGGAGATATTGAGGTGACTGAGGTGGT
GACGAAGCCGAGCTACATCACTGAATGGCAGCTCAGAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis