Browse Element(s) Details


Os.27144.1.S1_at

Description gb:AK065548.1
DB_XREF= gi:32975566
TID=Os.27144.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027M05, full insert sequence.
FL= gb:AK065548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g103002/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300Os.27144.1.S1_at2/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300OsAffx.17967.1.A1_at1/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.27804.1.S1_at11/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_x_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27144.1.S1_at--423--751Chr08:5998655..5998679 (25 bp)
ATGTCTAGGGTCCTGGCAATTCTTA
LOC_Os08g10300
Os.27144.1.S1_at--563--6011Chr08:5998806..5998830 (25 bp)
GAGAGCAGAGGGAGACTTCCCCACT
LOC_Os08g10300
Os.27144.1.S1_at--246--3111Chr08:5998882..5998906 (25 bp)
AATATGTTCAAATCGCTTCTGGTTT
NONE
Os.27144.1.S1_at--249--3051Chr08:5998892..5998916 (25 bp)
AATCGCTTCTGGTTTTAGCTTCAAG
NONE
Os.27144.1.S1_at--362--10011Chr08:5998907..5998931 (25 bp)
TAGCTTCAAGTGATATTTTTGGACA
NONE
Os.27144.1.S1_at--1154--10391Chr08:5998923..5998947 (25 bp)
TTTTGGACATTGTGGAGTTGCAACA
NONE
Os.27144.1.S1_at--600--3831Chr08:5998969..5998993 (25 bp)
CTGAATATTTTCCATACTCATAACC
NONE
Os.27144.1.S1_at--683--7831Chr08:5999004..5999028 (25 bp)
GGTAATTTGTATATGCCAGTTGTAT
NONE
Os.27144.1.S1_at--785--4411Chr08:5999018..5999042 (25 bp)
GCCAGTTGTATTTGCATGGGTGCTT
NONE
Os.27144.1.S1_at--246--3011Chr08:5999086..5999110 (25 bp)
AATGACTGACGAATTTGTTGGCTAG
NONE
Os.27144.1.S1_at--261--5231Chr08:5999096..5999120 (25 bp)
GAATTTGTTGGCTAGAGCACACTTC
NONE
Target Sequence 
ATGTCTAGGGTCCTGGCAATTCTTACNGGAGACATTGAGATGACTGANATGGTGACGAAGCCGAGCTACATCACTGAGTG
GCAACTCAGAGGAGGGAANACCAGCTATNTAAGCAGCAACTANAGCTCTGGATCTACTACTGGTGANTTTAGAGAGCAGA
GGGAGACTTCCCCACTCACCCCTTCTCCAACGATAACCNGAGTCACATATGATGGAAGGTGAATGCAAATATGTTCAAAT
CGCTTCTGGTTTTAGCTTCAAGTGATATTTTTGGACATTGTGGAGTTGCAACAAATATATNGANTTATTTTGTTCTGAAT
ATTTTCCATACTCATAACCNAGTCATCNTGGTAATTTGTATATGCCAGTTGTATTTGCATGGGTGCTTTNAAATTCATTT
AGNTAANTNAGTTTTGATTTTTTTTTTTTTGAGAAATGACTGACGAATTTGTTGGCTAGAGCACACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis