Browse Element(s) Details


OsAffx.17967.1.A1_at

Description tigr:9637.m02672
TID=OsAffx.17967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g103001/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300Os.27144.1.S1_at2/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300OsAffx.17967.1.A1_at1/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.27804.1.S1_at11/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_x_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17967.1.A1_at--737--8351Chr09:18248449..18248473 (25 bp)
GGCGGCAGATGGCTCCTCGGAGGAC
NONE
OsAffx.17967.1.A1_at--894--4131Chr09:18248435..18248459 (25 bp)
CCTCGGAGGACGCTTCGGATGGGCC
NONE
OsAffx.17967.1.A1_at--1091--7771Chr09:18248311..18248335 (25 bp)
GGTGCTCGCGTCTTCCTCTTCGTCT
NONE
OsAffx.17967.1.A1_at--632--1031Chr09:18248254..18248278 (25 bp)
AGGTGCCGTGGCAGCCGGGCTCTTG
NONE
OsAffx.17967.1.A1_at--1009--8311Chr09:18248237..18248261 (25 bp)
GGCTCTTGGACGGAGCAGCACCGTC
NONE
OsAffx.17967.1.A1_at--676--772Chr08:5995761..5995783 (22 bp)
ATGTCCATGCCCATCGTCTTGAGCG
LOC_Os08g10300
OsAffx.17967.1.A1_at--350--591Chr09:18248184..18248208 (25 bp)
ATGCCCATCGTCTTGAGCGGCCCGG
NONE
OsAffx.17967.1.A1_at--201--2651Chr09:18248154..18248178 (25 bp)
AAGCCAAGCTCCTCGGAGGCTTCAG
NONE
OsAffx.17967.1.A1_at--686--4791Chr09:18248147..18248171 (25 bp)
GCTCCTCGGAGGCTTCAGACAGCAT
NONE
OsAffx.17967.1.A1_at--1123--1971Chr09:18248102..18248126 (25 bp)
ACTCGGACTCTTCAGACTCCGGTGA
NONE
OsAffx.17967.1.A1_at--772--5711Chr09:18248097..18248121 (25 bp)
GACTCTTCAGACTCCGGTGACTCGG
NONE
Target Sequence 
GGCGGCAGATGGCTCCTCGGAGGACGCTTCGGATGGGCCGCTCGCCGCCTCCTCCGCCTCGGCGTCGGGGGCGCCCGCCG
GGGCCTCCTCCTCCCCCTCCGCCTCCTCGCTCGCGCCGGGCGCAGACGCCGGCGACGCGGTGCTCGCGTCTTCCTCTTCG
TCTCCCTCCTCCGCCGGCGCGGCGGCTGCGCCTGCAGGTGCCGTGGCAGCCGGGCTCTTGGACGGAGCAGCACCGTCGTC
GTCGTCGTCGAGCATGTCCATGTCCATGCCCATCGTCTTGAGCGGCCCGGCCCCCAAGCCAAGCTCCTCGGAGGCTTCAG
ACAGCATCCCCGGGCCCTCCGCAGCCCACTCGGACTCTTCAGACTCCGGTGACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17967.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis