Browse Element(s) Details


Os.52580.2.S1_at

Description gb:AK068147.1
DB_XREF= gi:32978165
TID=Os.52580.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135P07, full insert sequence.
FL= gb:AK068147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1033011/11SHR5-receptor-like kinase, putative, expressed
LOC_Os08g103101/11SHR5-receptor-like kinase, putative, expressed
LOC_Os08g103201/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10310Os.27804.1.S1_at11/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_x_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.14862.1.S1_s_at11/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.14862.1.S1_a_at8/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_x_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330OsAffx.29133.1.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.1.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10340Os.37607.1.A1_at11/118+6049485..6052651F-box domain containing protein, expressed
LOC_Os08g10350Os.14108.1.S1_at10/118+6056430..6059012integral membrane family protein, putative, expressed
LOC_Os08g10360NANA8+6065206..6072519retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52580.2.S1_at--1090--2831Chr08:6039531..6039555 (25 bp)
AATGTATAATTCCAAGTTTCCAACT
LOC_Os08g10330
Os.52580.2.S1_at--338--3131Chr08:6039538..6039562 (25 bp)
AATTCCAAGTTTCCAACTCTTCACT
LOC_Os08g10330
Os.52580.2.S1_at--742--2831Chr08:6039544..6039568 (25 bp)
AAGTTTCCAACTCTTCACTCACATT
LOC_Os08g10330
Os.52580.2.S1_at--640--10691Chr08:6039548..6039572 (25 bp)
TTCCAACTCTTCACTCACATTGGTA
LOC_Os08g10330
Os.52580.2.S1_at--887--2531Chr08:6039552..6039576 (25 bp)
AACTCTTCACTCACATTGGTAGTTG
LOC_Os08g10330
Os.52580.2.S1_at--29--9571Chr08:6039555..6039579 (25 bp)
TCTTCACTCACATTGGTAGTTGATA
LOC_Os08g10330
Os.52580.2.S1_at--1068--8571Chr08:6039568..6039592 (25 bp)
TGGTAGTTGATATGACCTCAGTACT
LOC_Os08g10330
Os.52580.2.S1_at--569--6651Chr08:6039573..6039597 (25 bp)
GTTGATATGACCTCAGTACTATTAT
LOC_Os08g10330
Os.52580.2.S1_at--1016--5831Chr08:6039581..6039605 (25 bp)
GACCTCAGTACTATTATAACCATCT
LOC_Os08g10330
Os.52580.2.S1_at--580--2031Chr08:6039590..6039614 (25 bp)
ACTATTATAACCATCTCAATTGCAG
LOC_Os08g10330
Os.52580.2.S1_at--946--9733Chr08:6039605..6039629 (25 bp)
TCAATTGCAGATTATTCCTTTGCGG
LOC_Os08g10330
Target Sequence 
AATGTATAATTCCAAGTTTCCAACTCTTCACTCACATTGGTAGTTGATATGACCTCAGTACTATTATAACCATCTCAATT
GCAGATTATTCCTTTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52580.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis