Browse Element(s) Details

Os.14108.1.S1_at

Description

gb:AK101564.1
DB_XREF= gi:32986773
TID=Os.14108.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050E20, full insert sequence.
FL= gb:AK101564.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g10350	10/11	integral membrane family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g10320	Os.14862.1.S1_s_at	11/11	8	+	6025881..6032797	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320	Os.14862.1.S1_a_at	8/11	8	+	6025881..6032797	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320	Os.52580.2.S1_at	1/11	8	+	6025881..6032797	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320	Os.52580.2.S1_x_at	1/11	8	+	6025881..6032797	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330	Os.52580.2.S1_x_at	11/11	8	+	6034186..6042219	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330	OsAffx.29133.1.S1_x_at	11/11	8	+	6034186..6042219	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330	Os.52580.2.S1_at	11/11	8	+	6034186..6042219	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330	Os.52580.1.S1_at	11/11	8	+	6034186..6042219	SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10340	Os.37607.1.A1_at	11/11	8	+	6049485..6052651	F-box domain containing protein, expressed
LOC_Os08g10350	Os.14108.1.S1_at	10/11	8	+	6056430..6059012	integral membrane family protein, putative, expressed
LOC_Os08g10360	NA	NA	8	+	6065206..6072519	retrotransposon protein, putative, unclassified
LOC_Os08g10370	OsAffx.31869.1.S1_at	7/11	8	+	6072815..6073918	retrotransposon protein, putative, unclassified
LOC_Os08g10370	OsAffx.31869.3.S1_x_at	4/11	8	+	6072815..6073918	retrotransposon protein, putative, unclassified
LOC_Os08g10370	OsAffx.31869.5.S1_x_at	4/11	8	+	6072815..6073918	retrotransposon protein, putative, unclassified
LOC_Os08g10370	OsAffx.31869.3.S1_at	3/11	8	+	6072815..6073918	retrotransposon protein, putative, unclassified
LOC_Os08g10370	OsAffx.31869.3.S1_s_at	3/11	8	+	6072815..6073918	retrotransposon protein, putative, unclassified
LOC_Os08g10380	OsAffx.16934.1.S1_at	11/11	8	+	6079093..6079839	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0015784	biological_process	GDP-mannose transport
GO:0005794	cellular_component	Golgi apparatus
GO:0016020	cellular_component	membrane
GO:0005338	molecular_function	nucleotide-sugar transporter activity
GO:0005458	molecular_function	GDP-mannose transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14108.1.S1_at--156--665	1	Chr08:6056882..6056906 (25 bp)	GTTGTTGTAGCATGGTACCTGCACT	LOC_Os08g10350
Os.14108.1.S1_at--362--785	2	Chr08:16771906..16771930 (25 bp)	GGTACCTGCACTCACATTACAGTTA	NONE
Os.14108.1.S1_at--169--253	1	Chr08:6056830..6056854 (25 bp)	AACTTAGATGTGTTCATGTTCCCTG	LOC_Os08g10350
Os.14108.1.S1_at--706--351	1	Chr08:6056816..6056840 (25 bp)	CATGTTCCCTGTTGTTCTCTAAATT	LOC_Os08g10350
Os.14108.1.S1_at--125--371	1	Chr08:6056726..6056750 (25 bp)	CTAGGTGTTCTATTGCTTATGGGAT	LOC_Os08g10350
Os.14108.1.S1_at--55--81	1	Chr08:6056708..6056732 (25 bp)	ATGGGATAGCTTAGTGCTCCCTCAT	LOC_Os08g10350
Os.14108.1.S1_at--601--379	1	Chr08:6056692..6056716 (25 bp)	CTCCCTCATCAACATACAGCTGTAA	LOC_Os08g10350
Os.14108.1.S1_at--939--173	1	Chr08:6056535..6056559 (25 bp)	ACCATCTCCTTTCTGACATTGTATA	LOC_Os08g10350
Os.14108.1.S1_at--861--739	1	Chr08:6056501..6056525 (25 bp)	GTGATGATGCTTTTCGGACAATTTT	LOC_Os08g10350
Os.14108.1.S1_at--539--317	1	Chr08:6056476..6056500 (25 bp)	AATTGTTCAGCACTACTTTGTATGG	LOC_Os08g10350
Os.14108.1.S1_at--212--229	1	Chr08:6056430..6056454 (25 bp)	AAATGCCAATGATCTAGTGCTTCGC	NONE

Target Sequence

GTTGTTGTAGCATGGTACCTGCACTCACATTACAGTTACACTTTTACTTCAAAACTTAGATGTGTTCATGTTCCCTGTTG
TTCTCTAAATTACTCATGTGGTTTTTATAGGATAACATGTTTTCTTCATGAAAGTGTCATACCTNTTTCTGTTTTTCTAG
GTGTTCTATTGCTTATGGGATAGCTTAGTGCTCCCTCATCAACATACAGCTGTAATGGTTAATCATTTCCATCTTAGAAA
AATCTCAAGCTAATAGAAGAGTGAGTTAGGTACTTAGGTTTATGGTATTACTTTGAAAACGCAAACATGAATACAACATT
AGCTTGTCAATGATAATGCAAGAAGACACCATCTCCTTTCTGACATTGTATACCTATTGGAGTGATGATGCTTTTCGGAC
AATTTTAATTGTTCAGCACTACTTTGTATGGTTATATACTGTTTCAAAGTTCAAATGCCAATGATCTAGTGCTTCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis