Browse Element(s) Details


OsAffx.16934.1.S1_at

Description tigr:9636.m00998
TID=OsAffx.16934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1038011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10350Os.14108.1.S1_at10/118+6056430..6059012integral membrane family protein, putative, expressed
LOC_Os08g10360NANA8+6065206..6072519retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.1.S1_at7/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.5.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_at3/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_s_at3/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10380OsAffx.16934.1.S1_at11/118+6079093..6079839hypothetical protein
LOC_Os08g10390OsAffx.8965.1.S1_at1/118+6092034..6094474hypothetical protein
LOC_Os08g10400Os.8987.1.S1_at4/118+6096652..6099054expressed protein
LOC_Os08g10400Os.10468.1.S1_at2/118+6096652..6099054expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16934.1.S1_at--1088--10731Chr08:6079249..6079273 (25 bp)
TTGCAGCCATCGTTGTCGACCACCT
LOC_Os08g10380
OsAffx.16934.1.S1_at--458--6011Chr08:6079332..6079356 (25 bp)
GAGAGCTTGGGAGCCACCGCTTTCG
LOC_Os08g10380
OsAffx.16934.1.S1_at--471--8631Chr08:6079339..6079363 (25 bp)
TGGGAGCCACCGCTTTCGTCGCTGT
LOC_Os08g10380
OsAffx.16934.1.S1_at--451--1711Chr08:6079489..6079513 (25 bp)
ACCACCATTGCAGCCGTCATTGTTG
LOC_Os08g10380
OsAffx.16934.1.S1_at--128--71Chr08:6079495..6079519 (25 bp)
ATTGCAGCCGTCATTGTTGACCACC
LOC_Os08g10380
OsAffx.16934.1.S1_at--858--7131Chr08:6079504..6079528 (25 bp)
GTCATTGTTGACCACCTCCACGGTG
LOC_Os08g10380
OsAffx.16934.1.S1_at--52--3371Chr08:6079516..6079540 (25 bp)
CACCTCCACGGTGGGAGACCTCGGG
LOC_Os08g10380
OsAffx.16934.1.S1_at--141--1251Chr08:6079531..6079555 (25 bp)
AGACCTCGGGACTGGCTACCGTCGC
LOC_Os08g10380
OsAffx.16934.1.S1_at--291--9971Chr08:6079547..6079571 (25 bp)
TACCGTCGCCGTCATTGATCTCATC
LOC_Os08g10380
OsAffx.16934.1.S1_at--267--1911Chr08:6079708..6079732 (25 bp)
ACGTCCGTCCTCAGCAACAGCTGCG
LOC_Os08g10380
OsAffx.16934.1.S1_at--662--3351Chr08:6079740..6079764 (25 bp)
CACGACCTCCCCACGAGAGAGAGAG
LOC_Os08g10380
Target Sequence 
TTGCAGCCATCGTTGTCGACCACCTCCGCGGTGGGAGGCCTCGAGACCCGCCGTCTTCGCCGTCGTCGACCTTATCTGCG
CAGGAGAGCTTGGGAGCCACCGCTTTCGTCGCTGTCCTCGTCATGGTCTTCGGCGAGCCGCACCGCCTCCACCCGGATCT
GGCGAGCTCGTGACCGTCCTCGCCGGCAGCGGCTACGCCCGCGTCCCTCCGCAACCTCCTCACCGTCTACCTCTCTCTCC
ACCACCATTGCAGCCGTCATTGTTGACCACCTCCACGGTGGGAGACCTCGGGACTGGCTACCGTCGCCGTCATTGATCTC
ATCTGTGCGGGAGAGCTTGGGAGCCGCTGCCGCCGTCGCTGTCCTCGTCGTGGTCGTCGGCAAGCCGCACTGCCTCCACC
CAGATCTGGCGAGCTCGCGACCGTCCTCGCCGACAGCGGCTGCGCCCGCGCCCGCCTCCACGTCCGTCCTCAGCAACAGC
TGCGCCCCCTCCACGACCTCCCCACGAGAGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis