Browse Element(s) Details


Os.37607.1.A1_at

Description gb:AK106289.1
DB_XREF= gi:32991498
TID=Os.37607.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B01, full insert sequence.
FL= gb:AK106289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1034011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10320Os.14862.1.S1_s_at11/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.14862.1.S1_a_at8/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_x_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330OsAffx.29133.1.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.1.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10340Os.37607.1.A1_at11/118+6049485..6052651F-box domain containing protein, expressed
LOC_Os08g10350Os.14108.1.S1_at10/118+6056430..6059012integral membrane family protein, putative, expressed
LOC_Os08g10360NANA8+6065206..6072519retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.1.S1_at7/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.5.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_at3/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_s_at3/118+6072815..6073918retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37607.1.A1_at--1094--6091Chr08:6050682..6050706 (25 bp)
GAGTCGCTTTCCACTGTGTGCATAG
LOC_Os08g10340
Os.37607.1.A1_at--668--10311Chr08:6050740..6050764 (25 bp)
TTTCGGACCCTAACAGCGCATATGT
LOC_Os08g10340
Os.37607.1.A1_at--1023--4711Chr08:6050812..6050836 (25 bp)
GCTGGTTCAACTACATGACGGCTGT
LOC_Os08g10340
Os.37607.1.A1_at--105--5751Chr08:6050828..6050852 (25 bp)
GACGGCTGTGTCCTTTGAGATCAAC
LOC_Os08g10340
Os.37607.1.A1_at--496--2571Chr08:6050850..6050874 (25 bp)
AACTGGCATTCATTCTTCTTGACTC
LOC_Os08g10340
Os.37607.1.A1_at--169--4711Chr08:6052329..6052353 (25 bp)
GCTGGAAGAAGTACCTACCCTGGAA
LOC_Os08g10340
Os.37607.1.A1_at--1005--5371Chr08:6052375..6052399 (25 bp)
GAAGCAATTGATGCCCTGCGACCTT
LOC_Os08g10340
Os.37607.1.A1_at--946--3811Chr08:6052390..6052414 (25 bp)
CTGCGACCTTCGTGAGCTGGAATTG
LOC_Os08g10340
Os.37607.1.A1_at--191--7891Chr08:6052414..6052438 (25 bp)
GGTTAGCCTTCTCTTTAGGATCTGT
LOC_Os08g10340
Os.37607.1.A1_at--1157--10291Chr08:6052445..6052469 (25 bp)
TTTCTCCTTCCTGTTAGTGTGTTTT
LOC_Os08g10340
Os.37607.1.A1_at--235--1111Chr08:6052460..6052484 (25 bp)
AGTGTGTTTTGCTGCTGCTCAGTCA
LOC_Os08g10340
Target Sequence 
GAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATA
TGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCT
TTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTAC
CTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCT
TCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37607.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis