Browse Element(s) Details


OsAffx.5775.1.S1_at

Description tigr:9636.m00988
TID=OsAffx.5775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1027010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300Os.27144.1.S1_at2/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10300OsAffx.17967.1.A1_at1/118+5991905..5998876SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5775.1.S1_at--967--5791Chr08:5964119..5964143 (25 bp)
GACGCGTTGCCTGCCAAACAGATGC
LOC_Os08g10270
OsAffx.5775.1.S1_at--47--10711Chr08:5964125..5964149 (25 bp)
TTGCCTGCCAAACAGATGCAGCACG
LOC_Os08g10270
OsAffx.5775.1.S1_at--668--651Chr08:5964140..5964164 (25 bp)
ATGCAGCACGACACGGCAAGGCGAA
LOC_Os08g10270
OsAffx.5775.1.S1_at--355--5551Chr08:5964177..5964201 (25 bp)
GAAACGAGGGCAAGGCAGCGCGCAC
LOC_Os08g10270
OsAffx.5775.1.S1_at--1079--7811Chr08:5964231..5964255 (25 bp)
GGTACACGACAATGAGGTCGAGGTC
LOC_Os08g10270
OsAffx.5775.1.S1_at--503--4571Chr08:5964266..5964290 (25 bp)
GCGCGCGGCGAATGGGATGGACTTG
LOC_Os08g10270
OsAffx.5775.1.S1_at--458--4691NONE
GCGGCCGCCCTGTGCGAATTGGGTT
NONE
OsAffx.5775.1.S1_at--923--5192Chr08:5965332..5965356 (25 bp)
GAATTGGGTTGGAAAGCTACGGATT
LOC_Os08g10270
OsAffx.5775.1.S1_at--669--4112Chr08:5965364..5965388 (25 bp)
CCCATCCCAAAACCTAGGGCTAGAG
LOC_Os08g10270
OsAffx.5775.1.S1_at--410--1392Chr08:5965375..5965399 (25 bp)
ACCTAGGGCTAGAGGATTTGGCCGT
LOC_Os08g10270
OsAffx.5775.1.S1_at--903--5992Chr08:5966213..5966236 (24 bp)
GAGAGTAAGGGCAAACAGAAGCTTC
LOC_Os08g10270
Target Sequence 
GACGCGTTGCCTGCCAAACAGATGCAGCACGACACGGCAAGGCGAAGGAGGGGGGCGAGAAACGAGGGCAAGGCAGCGCG
CACCACCGCGTTCTACCCGGCCGCCGGCGCGGGGTACACGACAATGAGGTCGAGGTCGGAGAAGGCCGCGCGCGGCGAAT
GGGATGGACTTGGGGGCGGCCGCCCTGTGCGAATTGGGTTGGAAAGCTACGGATTCCCCTCCCCCATCCCAAAACCTAGG
GCTAGAGGATTTGGCCGTGCCGGTGGCACGAGCAAGCGGCGGCGACACGAACAGGCGACGGGGAGGCACGGCGACGCGAC
GCAGGGGAGTAGCAGGCGGCGGCGCGAAGGGGAGAGTAAGGGCAAACAGAAGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis