Browse Element(s) Details


Os.50870.2.S1_at

Description gb:AK065649.1
DB_XREF= gi:32975667
TID=Os.50870.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036J01, full insert sequence.
FL= gb:AK065649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1055010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10520Os.11991.1.S1_at11/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.57464.1.S1_x_at1/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50870.2.S1_at--438--5371Chr11:5773488..5773512 (25 bp)
GAAGACGCTTGCTCATGTCAAACAA
LOC_Os11g10550
Os.50870.2.S1_at--966--5151Chr11:5773080..5773104 (25 bp)
GCAAGCCATAAACTCATACAGCATA
LOC_Os11g10550
Os.50870.2.S1_at--288--4951Chr11:5773060..5773084 (25 bp)
GCATAGAAGTTCACTCCAGGCTGCA
LOC_Os11g10550
Os.50870.2.S1_at--766--1271NONE
AGATCATAGAAGTTCACTCCAGGAT
NONE
Os.50870.2.S1_at--289--3431Chr11:5772847..5772871 (25 bp)
CAGAGTTTTTTGTCAGGTCGTCGTC
LOC_Os11g10550
Os.50870.2.S1_at--600--9231Chr11:5772817..5772841 (25 bp)
TCCTCGACTTCTGTTACGGTTTTAT
LOC_Os11g10550
Os.50870.2.S1_at--707--1191Chr11:5772764..5772788 (25 bp)
AGTATGGGCCGTCAATCCATCCGTA
LOC_Os11g10550
Os.50870.2.S1_at--929--10631Chr11:5772725..5772749 (25 bp)
TTCGCGACGGACCTTCAGTGATGAA
LOC_Os11g10550
Os.50870.2.S1_at--1106--10411Chr11:5772585..5772609 (25 bp)
TTATCCCCAAATTCTTCATCATGTT
LOC_Os11g10550
Os.50870.2.S1_at--746--2091Chr11:5772514..5772538 (25 bp)
ACATCCTTCATAATTGGTCCTTGAC
LOC_Os11g10550
Os.50870.2.S1_at--1099--7771Chr11:5772499..5772523 (25 bp)
GGTCCTTGACCACTTAATTTAGAAT
LOC_Os11g10550
Target Sequence 
GAAGACGCTTGCTCATGTCAAACAAATCAAATTGCGTTAATTAGCAAGCCATAAACTCATACAGCATAGAAGTTCACTCC
AGGCTGCAAAAATCAAAGGCCTTGATTAATGGAGATTGAGATCATAGAAGTTCACTCCAGGATGAATGAAGCTGTCATAT
TCAGCAGAGTTTTTTGTCAGGTCGTCGTCCATCGTCCTCGACTTCTGTTACGGTTTTATTCAGGGAAATTTACACTTGAA
TATAATCAGTATGGGCCGTCAATCCATCCGTATCCTGCTGCATCCCTTCGCGACGGACCTTCAGTGATGAAAGCGTATTT
TGCTATTTTCTGCCAGGAATTTAAGTTCATAGTTAAGAGAAGATTCAATTTTGTTACATAATGCTAGGTCTAAAATGTTA
GATTCCACATCTTGTGGTATAAGTTTTTATCCCCAAATTCTTCATCATGTTTTAACTTCTATTCTCTACAAAATTCTATG
CATGTGTTCTATGTAACACATCCTTCATAATTGGTCCTTGACCACTTAATTTAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50870.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis