Browse Element(s) Details


OsAffx.18782.1.S1_at

Description tigr:9639.m00996
TID=OsAffx.18782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1054011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10520Os.11991.1.S1_at11/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.57464.1.S1_x_at1/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18782.1.S1_at--1112--7531Chr11:5769547..5769571 (25 bp)
GTGGCGTACGGTTGGTTATCTATTC
LOC_Os11g10540
OsAffx.18782.1.S1_at--74--6631Chr11:5769557..5769576 (20 bp)
GTTGGTTATCTATTCCAGAGCTTGG
LOC_Os11g10540
OsAffx.18782.1.S1_at--324--3431Chr11:5771226..5771248 (23 bp)
CAGAGCTTGGTTGGCACCTGGAGTA
LOC_Os11g10540
OsAffx.18782.1.S1_at--373--6611Chr11:5771233..5771257 (25 bp)
GTTGGCACCTGGAGTATCAGCCCTT
LOC_Os11g10540
OsAffx.18782.1.S1_at--1097--6891Chr11:5771246..5771270 (25 bp)
GTATCAGCCCTTCCTGGAACTGAAT
LOC_Os11g10540
OsAffx.18782.1.S1_at--778--2551Chr11:5771263..5771287 (25 bp)
AACTGAATCACCTTCCTGATCTGAA
LOC_Os11g10540
OsAffx.18782.1.S1_at--435--8851Chr11:5771279..5771303 (25 bp)
TGATCTGAAGCTCCTTGCTCCACTT
LOC_Os11g10540
OsAffx.18782.1.S1_at--154--9251Chr11:5771290..5771312 (23 bp)
TCCTTGCTCCACTTATAACTCAGAA
LOC_Os11g10540
OsAffx.18782.1.S1_at--702--1491Chr11:5772712..5772736 (25 bp)
AGCAAAATACGCTTTCATCACTGAA
LOC_Os11g10540
OsAffx.18782.1.S1_at--741--3331Chr11:5772730..5772918 (25 bp)
CACTGAAGATCAAAAGAGCGGGTTT
LOC_Os11g10540
OsAffx.18782.1.S1_at--776--6631Chr11:5772961..5772985 (25 bp)
GTTGTCTCGCAGCAACAAACTGTGA
LOC_Os11g10540
Target Sequence 
GTGGCGTACGGTTGGTTATCTATTCCAGAGCTTGGTTGGCACCTGGAGTATCAGCCCTTCCTGGAACTGAATCACCTTCC
TGATCTGAAGCTCCTTGCTCCACTTATAACTCAGAAAATAGCAAAATACGCTTTCATCACTGAAGATCAAAAGAGCGGGT
TTCGTCAAATAATTAGAAATATACTGTTAAATAGTACTATCAATGTTGTCTCGCAGCAACAAACTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis